Gossypium hirsutum (upland cotton): 107923982
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Entry
107923982 CDS
T04793
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107923982
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107923982
Surveillance factors
Other surveillance factors
107923982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
107923982
NCBI-ProteinID:
XP_016709703
UniProt:
A0A1U8L8J0
LinkDB
All DBs
Position
A11:complement(6175908..6182958)
Genome browser
AA seq
1604 aa
AA seq
DB search
MADGKLDLPDDLIPSKICSDHFPKDEAWDRNLEEKGLTGLLDDNKDQPTSESSIPLSPQW
LYSKVAEAKTLTVGASGDTKTPNLLPHGTPGDPNLKDSWRLDSSQDKKEWRRTAPDLESS
RHWREEERETGLLGRRDRRKEDRRTDISSTMDVPENRILLSAERRQDVSSRSSGHESRRD
NRWSSRWGLEDKEKDSRNEKRTDVKKEDAPSDKQALAGGGRTASERENDSRDKWRPRHRL
EVHAGGSASYRSAPGFGLERGRVERSNVGFAAGRGRPNSNASLQIGRPQSASVIGALPVD
KNMTLNAYSYPRGKLLDIYRKQRTAPNFDNLPDEMDHLSTVTQKEIVVPLAFVPPDAEEE
AVLGDIWKGKTISSEVVYNSFMDASEGKECFSVNMKDSVEPGEKAAVNNNFEGSHAETFY
VSDSQMIMSKEMNSSKEGGQRCMPPSDVDVTNALGLDREMGGSTNYMDELKSFDNRQVAD
LKMQKDSNVKDNGSSMKFGVGELPEDSSSLFGFSSLQPRVGCNPISVEGNIAAHSLESAI
PPEDMSLCYLDPQGVIQGPYLGIDIISWFELGYFGTDLPVRLANAPDGSPFQELGEVMPH
LRMNPGSASSVSAVARMRVPDHFEGSLEDPISSSASAPAQGSAIGRELQQSLSLFEASGT
NFQLRGPSQSYHSEHQFYEDPNIHNFAVAQADEIVFSGRPGSAGADPLKVSAEMQDPLRH
PASHLSIANEFSKTNAPHRGDELLPEAWSDDHRRNAVFNPNIHLGTTGARPLSHREQEHN
GLDLVQHLMSQKFPNEPLQEKNNFFHALPHSTGFGVEHIHSFDLMQSKNLNHQQSVHHSA
PHMEHLLELQFEQQRQLELQRQQHQLELQRQQQLEHQRQQQLELQQHQRLLELQRQQQLE
LQQHQRQLELQRQQELRHHQIELLQQLQQQHLQQQNSQAQHILLDQLLQHQISDPGYGQE
VFDAARDIQLDQVQFQRHLLSELQNNSQASRHLDPSLEQIIQAKINQSAVQGQQADFLDF
MSQAKYGNMLPSEHQLRLQREQFQVQQLSRSLSQQLGMEEDRQLAGSLSVDEVGQFVRNP
GIHPQALSMELNGSDLHQKRLSSFEEQISNIKRNHALREQQQRGTFDPSPTAFARSAHSA
AAPGMKLDNVNSLDLAEHLYMHSNNQLGPFSSGNHSFSQQTLGDVYASRPDLVYHSGKNE
QLENSWAGKQMQQLNLEADLQRRESEVDSSTWTSAGGIHEKSKKALMDLLHQKLGIQSTR
SSEGDYQYPTSSSRGRESFWPVSEPQASNFPFTHFSNQEVHVNNSYLEGPQNSNSGALLQ
DHLFGVAANGGVNQVVNCERLPHKSNPGSFAEDQSLLLGAEDLSSSSYADASLVSKSAVN
KELGELEGKEQKNGLKSMISRTGSVSGFEDNILEQVEMPLDCVDLQSRTHIRHGSLCTGV
NGRLYSNGIGLEKSVEDRPDDRLLSGVPKGDDKVAQISSSKDMLSDQNTVAFVKQKSLTN
QAKRTVETEASGRKDVSMRRTSSYNEAVVSEASFMEILKKPALHGAEVPVYGSAFEPASS
DGASQAGRSGKKKGKKGRQIDPALLGFKVTSNRILMGEIQRLDD
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggaaaactcgatctacctgatgatctcataccctcaaaaatctgctctgac
cacttccctaaagatgaagcttgggataggaacttggaggagaaaggactgaccgggcta
cttgatgacaacaaagatcaaccaacttcggagagcagcattcctctgtccccacagtgg
ctttactctaaagtagccgaagcaaagacgttaactgttggagcatctggggatacaaaa
actccgaatttgttgcctcatggaacccctggcgacccgaatctgaaagatagttggcgt
ttagatagttctcaggacaagaaagaatggaggaggactgcacctgatcttgaaagcagc
cgacactggcgtgaagaggagagggaaacaggcttacttggtcgaagagatcgcagaaaa
gaagaccgtcgcactgatatttcttcaacaatggatgttcctgaaaataggattttgttg
tctgcagaacgacgtcaagatgttagtagtcgtagttcagggcatgaatctcgaagggac
aacaggtggtcttcgagatggggtcttgaagacaaagaaaaggattctcgaaatgagaag
aggacagatgttaagaaggaagatgccccttctgacaaacaagcacttgccggtggtggg
cgcacagcttctgagcgcgagaacgattctcgtgataaatggaggccacgtcatcggttg
gaagttcatgcaggtgggtcagcttcttatcgcagtgctccaggttttggtttggagagg
gggcgagtggagagatcaaatgtgggttttgcagcaggacgaggaaggccaaattccaat
gcaagcctacaaattgggaggccacaatctgcttctgttattggagctcttcctgtggat
aaaaacatgacccttaatgcatattcctacccaagaggaaaactccttgacatttaccgc
aaacaaaggactgctccaaattttgacaacctacctgatgagatggatcatttatccaca
gtaacacaaaaagaaattgttgtgcctttggcatttgttccgcctgatgcagaggaagag
gctgtccttggagatatatggaaaggaaaaacaataagcagtgaagtggtctacaactca
tttatggatgcaagtgaaggaaaagagtgtttctcagttaacatgaaggatagtgttgaa
cctggtgagaaggctgctgtaaacaataattttgaggggagtcatgctgagacattttat
gtgtcagattcacagatgattatgagcaaggaaatgaatagttcaaaagaaggtggacag
agatgcatgccaccatctgatgtagatgtaaccaatgctttggggttagatagggagatg
ggtggttccacaaattacatggatgaattaaaatcttttgataatcggcaagtagctgat
ttgaaaatgcaaaaggactctaatgtgaaggacaacggatcatccatgaaatttggagtg
ggcgagcttccggaagactcaagttctctgtttggtttttcgtcactacagcctagagtc
ggctgtaacccgataagtgttgagggcaatattgctgcacattctctggaaagtgctatc
cctcctgaggatatgagcctgtgttatcttgatcctcaaggggtaattcagggaccgtat
ttggggattgacataatttcatggtttgagctaggttattttggtacagatttacctgtt
cgattggcaaatgctcctgacgggtcgcctttccaagaacttggtgaagtcatgcctcac
ctaagaatgaatcctggttcagcctccagtgttagtgcagttgccagaatgcgagtacct
gatcattttgaagggagcttggaagaccccatatcttcttctgcttctgctcctgctcag
ggatcagccattggacgtgagctgcagcaatctttgtctctttttgaggcatctggtact
aactttcagttaagagggccttctcaaagttatcattctgagcaccaattttatgaagat
ccaaacatccataattttgctgttgctcaagctgatgaaatcgttttttcaggaaggcct
ggaagtgctggtgctgaccctttgaaagtttctgctgagatgcaagatcctttgcgtcat
cctgcaagtcatttatccattgcaaatgaattttcaaaaaccaatgcacctcatcgaggt
gatgagttgctcccagaggcttggtctgatgatcatagaagaaatgctgtgtttaatcct
aacattcatctaggcactactggtgctaggccattatctcacagggagcaagaacacaat
ggtttggacctggtacagcacttaatgtcacaaaagtttcccaatgaacctcttcaagag
aaaaacaatttctttcatgcccttccacattcgactggatttggtgtggagcacatccat
agttttgatctgatgcagagcaagaatctcaatcatcagcagtcagtccatcattcagct
ccccatatggaacatcttttggaacttcaatttgaacagcagcggcagttggaactacaa
cggcagcagcatcagttggagcttcagaggcagcagcagttggagcatcagcggcagcag
cagttggagcttcagcagcatcaacgtctgttggagcttcagcggcagcagcagttggaa
cttcagcagcatcaacggcagttggaacttcagcggcagcaggagcttcgtcaccatcaa
attgaactgttgcagcagttgcaacaacaacatctgcagcagcagaattctcaagctcaa
catattcttcttgatcaattgctgcagcatcagatttctgatcctggctatggtcaggag
gtatttgatgctgctagagacatccaacttgatcaggttcagtttcaaaggcatcttcta
agtgaattgcagaataattctcaagcatcaaggcacctggatccatcactggagcagatc
atccaagcaaagattaaccagagtgcagtccaagggcaacaggctgattttttggatttc
atgtcacaagcaaagtatggcaacatgcttccttcggagcatcagctccgtcttcaaaga
gagcagtttcaagtgcagcagttatctaggtcgctgagccaacaattaggaatggaggag
gatagacaacttgctggttctttgtctgtagatgaagttggtcagtttgttaggaatcct
ggcattcatccccaggctctatcaatggagttgaatggttcagatcttcaccagaagagg
ctttcatcttttgaagagcaaatcagcaatattaaaaggaatcatgctttgcgggagcaa
cagcagcgagggacttttgaccccagccctacagcatttgccaggtctgctcattctgct
gctgctcctgggatgaaattagacaatgtaaattctctagatcttgctgaacatctctat
atgcactctaacaaccaactgggtccattttcttctggtaatcactcttttagccaacaa
actttgggtgatgtatatgcatctcgtccagatttagtctaccactctggaaaaaatgag
cagctagaaaatagttgggcaggaaaacagatgcaacaattaaatcttgaagcagatttg
caaagaagggagtccgaagttgattcaagcacttggacatcagctggagggattcatgaa
aagtctaagaaagctttaatggaccttcttcaccaaaaacttggtattcaatcgacaagg
tcatcagaaggagattatcagtatcctacttcatcttccagaggcagggaaagcttttgg
cctgtttctgagccacaagcttccaattttccttttactcatttctcgaatcaagaagtt
cacgtaaacaactcatatctggaaggccctcaaaattccaattcaggtgccttattgcaa
gatcatttgtttggagttgctgctaatggtggtgtcaaccaggtggttaactgtgaacga
ttgcctcataaatccaatccgggttcatttgctgaagatcaatcattgttgttgggcgct
gaagatctgtcttctagtagttatgcagatgctagcttagtgtcaaaatctgctgtgaat
aaggaattgggcgaactggaggggaaggagcagaaaaatggattgaaaagcatgatttca
aggactggttctgtgtcggggtttgaggacaatattttggagcaagtagagatgcctttg
gactgtgttgacctacaaagtagaacccatatccgtcatggttcactgtgtactggtgtc
aatggcaggttgtacagtaatggaattggattagagaaatcagttgaagaccgtcctgat
gataggttactgtctggggtgccgaaaggggatgataaagttgcacagatttcatcatcc
aaggatatgttatccgatcaaaacacagtggcatttgtgaagcagaaaagccttacaaat
caggcaaagaggacagtagaaacggaggcatcgggcaggaaagatgtgagtatgaggagg
acctcatcttataatgaggctgtagtgtctgaagcatcattcatggagattcttaagaag
ccggctcttcatggggcagaggtccccgtgtatggctctgcttttgagccagcatcatct
gatggtgcttcacaagctggacgaagtggcaagaaaaaagggaaaaagggaagacagatt
gatcctgccttgcttggttttaaggttacaagcaaccgtatcttgatgggtgagatccag
cgccttgacgattaa
DBGET
integrated database retrieval system
