Gossypium hirsutum (upland cotton): 107924168
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Entry
107924168 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37 isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107924168
03041 Spliceosome [BR:
ghi03041
]
107924168
03036 Chromosome and associated proteins [BR:
ghi03036
]
107924168
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107924168
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107924168
mRNA cycle factors
Common to processing body (P body) and stress granule
107924168
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107924168
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107924168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
107924168
NCBI-ProteinID:
XP_016709967
UniProt:
A0A1U8L5S9
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All DBs
Position
A11:complement(122381931..122386392)
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AA seq
618 aa
AA seq
DB search
MRTSWADSVSNSAAEIAISDKNSLPRPTRSTYVPPHLRSGSISDLSGPVSGTNGGSRWIG
SDGGGTKPELRRQGQGNSYATAGRDNAGGGGGGGVRNNRSGGWDRREREVNPFGNDDKID
DIKQNFSEQENSGINFDAYEDIPVEVSGENVPPPVNTFAEIDLGEILNQNIRRCKYVKPT
PVQRHAIPIALAGKDLMACAQTGSGKTAAFCFPIISGIMREPYAQRTRVGRTVYPLGLIL
SPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE
RARVSLQAIRYLALDEADRMLDMGFEPQIRKIVEQMNMPNRGVRQTMLFSATFPREIQRL
ASDFLSNHIFLAVGRVGSSTDLIVQRVEFVLESDKRSHLMDLLHAQRENGNHGKVSLTLQ
QALTLVFVETKKGADSLEHWLCMNGFPSTTIHGDRTQQERELALRSFKSGKTPILVATDV
AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNESNLSLARALAELM
QEANQEVPAWLTHYASRAPYGGNKNRRSGGRFGGCDFRREESIGKNLDYYSGGNSGNAYG
GLVDIGGGYAPGVTSAWD
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttcatgggcggattctgtgtcaaattctgcagctgaaattgcaatttcggac
aaaaattcattacctcgtcctactcgttccacttatgtccctccccaccttcgtagcggt
tcaatttccgacctgtcaggtccggttagcgggaccaatggtgggtcccgttggatcggc
agtgatggtggagggacaaagcctgaactcaggcgtcaaggacaggggaatagttatgct
acagcgggacgagataacgctggtggtggtggtggtggtggtgttcggaataatagaagt
ggaggttgggataggagagaaagggaagtaaatccatttggtaatgatgataaaattgat
gatataaaacaaaattttagtgaacaagagaattccggtatcaatttcgatgcatacgaa
gatattccagtggaagttagtggtgaaaatgtgccaccgcctgtaaatacatttgccgag
atagatttaggtgaaattttgaatcaaaacattaggaggtgcaagtatgtgaaaccgact
ccggtacaacgtcacgctatccctatagcattagcaggtaaagatttaatggcttgtgct
caaactgggtcagggaagacggctgcattttgttttcctattattagtggaattatgcga
gagccgtatgcacaaagaacgcgtgtaggacgaactgtttaccctcttggtcttattttg
tctcctacgagggaactttcttgtcagatacacgatgaggccaaaaaattctcgtatcaa
actggcgtcaaggtggttgttgcttatggaggagcaccgattaaccaacagttgcgggag
ctagagagaggagttgatatacttgtggcaacgccaggacgattggttgatttgctagag
agggcccgagtgtcattgcaagcaattaggtacttggccctcgacgaggcagatcgcatg
cttgatatgggttttgagccacaaattaggaagatagttgaacaaatgaatatgcctaat
cggggtgtgagacagacaatgttgttcagtgccacttttccaagagagatacagagactt
gcttccgattttctttcgaaccacatattcttggctgttgggagggtcggctcaagtacc
gatttgattgttcaaagggttgaatttgttcttgagtctgataaaagaagccatctcatg
gatcttctacatgcacagagggaaaatggaaatcatggaaaggtatctttgactttgcag
caagctttgacattagttttcgtggagactaaaaaaggagctgactcattggaacactgg
ctctgcatgaatggattcccatcaacgaccatccatggtgataggactcaacaggaaagg
gaactagcattgagatctttcaagagtggaaagaccccgattctagtagcaactgatgtg
gctgctcgtggtcttgatataccccatgtagctcatgttgtcaacttcgatcttcccaat
gacatcgacgattatgtccatcgaattggaaggaccggacgtgctggtaaaactgggtta
gccaccgctttctttaatgaaagcaatttatcactagcaagagcactagctgagctaatg
caagaagcaaatcaagaagtacctgcatggcttacccattatgcatcccgagctccttat
ggtggtaacaagaaccgacgatccggtgggcgtttcggtgggtgtgatttcaggcgagag
gaatcaattggtaaaaatctagattactacagcggaggaaatagtggtaatgcatacgga
ggtctggttgatatcggtggaggatacgcaccaggtgtgactagtgcatgggattag
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