Gossypium hirsutum (upland cotton): 107924201
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Entry
107924201 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107924201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107924201
03009 Ribosome biogenesis [BR:
ghi03009
]
107924201
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107924201
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
U1 related factors
107924201
Complex B
107924201
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107924201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
107924201
NCBI-ProteinID:
XP_016710022
UniProt:
A0A1U8L5Y4
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All DBs
Position
A11:4012268..4016664
Genome browser
AA seq
623 aa
AA seq
DB search
MTPYDRRYGDPQSYRQRRSDFMGQPPPVGPTTMGPGMAMPSSYPRGGQIPYGGPPTAHPP
SFHGRVHGPVRGQGDFDSYSSFRPPVGRFEMGRGGDIGHSHADRRSDGIRGREAGRGGGG
RGGGGRGGGGRGYGGRHGGSSRGDLDNVSLPRQNFGKLVPFEKNFYIESPAVREMTEQEV
MFYRRTRDITVQGHDVPKPIRMFRDANFPDYCLEVIANLGFVEPTPIQAQGWPMALKGKD
LIGIAETGSGKTLAYLLPALVHVNAQPRLVHGEGPIVLILAPTRELAVQIQEEAAKFANH
ANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQNTNLKRVTYLVLDEADRM
LDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVESLARQFLSNPYKVIIGSPDLKANQSI
NQVVEVITDPEKYNRLIKLLKDLMDGNRILIFMETKKGCDQVTRQLRMDGWPALSIHGDK
NQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRA
GAKGTAFTFFTQANAKYARDLIKLLQDAGQVVSPALSTLARSAGSKFGGSGGNFRSRGRG
GYGNRAMISGSNAVSLGAKKRPW
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgactccttacgaccgaagatatggcgacccccaatcttaccgtcagcgtagaagtgat
tttatgggccaaccgcctccggtaggtccaactactatgggtccaggaatggccatgcct
tcctcttacccccgcggcggacaaattccttacggtggccctcctacagcgcaccctccg
tcttttcatggaagagttcacgggcccgtccgaggtcaaggggatttcgattcgtactcg
agcttccggccacccgtgggaagattcgagatgggccgcggtggggacataggtcattct
catgcagacaggagaagtgatgggataagaggtcgtgaagccggccgtggtggaggcggt
agaggcggtggtggccgtggcggcggcggaagaggttatggagggaggcacggagggtcc
tctagaggggatttagacaatgtttcgcttccaaggcaaaattttggcaagttggttcct
tttgagaagaacttttatatcgaaagtcctgcagttagagaaatgacagagcaagaagta
atgttttatcgtagaacacgggacattacagttcaaggacatgatgttccaaaaccgata
aggatgttccgtgatgccaattttcctgattactgtcttgaggtgattgccaatttgggt
tttgttgagccaactccaattcaagctcagggctggcctatggctttaaagggtaaagat
ctaattgggattgctgagactggttctggaaaaacactggcatacttactgccagcattg
gtgcatgttaatgcacagccacgattggtgcatggtgagggtcctattgtattaatatta
gcacctacgagggagttggctgttcaaattcaagaagaagctgcaaagtttgcaaatcat
gctaacataaggagtacttgcatctatggtggtgctcctaagggaccacaaattagggat
cttaaaagaggtgttgagattgtaattgccacacctggtcgactgatagatatgctagaa
gctcaaaacacaaacttgaaaagagtgacttaccttgttctggatgaagctgatagaatg
ttggacatggggtttgagcctcaaataagaaagattgtttctcagattcgacctgataga
caaacattgtactggagtgcaacgtggcctaaagaagttgaatctttagcaaggcagttt
ttaagcaacccatataaggttatcattggatcacctgatctgaaagcaaaccaatctatt
aaccaagttgttgaagtcataacagatccagaaaagtacaacaggctaatcaaattgctg
aaggatctgatggatgggaaccgaatactaatattcatggagacaaagaagggatgtgac
caagttactaggcagctcagaatggatggatggcctgccctgtccatccatggtgataaa
aaccaggctgaaagagattgggtcctggctgaatttaaaagtggccgaagtcctataatg
actgccactgatgtggctgcacggggtcttgatgtaaaggacataaagtgtgtgatcaac
tatgattttccttcgagtctggaggattatgtacataggattggtagaactggtcgagca
ggggctaagggaactgcttttaccttcttcacacaggcaaatgcaaagtatgctagggac
cttatcaagctcctgcaagatgctgggcaggttgtctcccccgcattgtctacattggct
cgttctgcaggttcgaagtttggaggttctggaggaaactttcgctcccgaggacgcggc
ggctatggtaaccgggctatgatatcaggatcaaatgctgtatctctcggtgcaaagaag
agaccctggtag
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