Gossypium hirsutum (upland cotton): 107924356
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Entry
107924356 CDS
T04793
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107924356
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107924356
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107924356
NCBI-ProteinID:
XP_016710245
UniProt:
A0A1U8L6L4
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Position
A11:complement(16221106..16224815)
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AA seq
445 aa
AA seq
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MEISRRFFFSSFTLLLVMLYVCVNGSAEKTELNSRLAEGNKLQGLKNSSTADGLDDDKWK
NEHAVDNPEEIASMVDMTIKNSTARRNLGYFSCGTGNPIDDCWRCDRRWYRRRRRLASCG
IGFGRNAIGGRDGRYYVVTDPGDDNPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQEL
IMNSFKTIDARGVNVHIAYGACITIQYVTNIIIHGLHIHDCKPTGNAMVRSSPSHYGWRT
MADGDGISIFGSSYIWIDHNSLSNCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDS
YVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGN
RYLAPVNPFAKEVTKRVDTYSDEWKHWNWRSEGDLLLNGAYFTPSGAGRAANYARASSLS
AKSSFLVGTLTSNAGALACRPGRMC
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggagatttctcggagattcttcttctcttcgtttacgttgctacttgttatgttgtac
gtttgtgtcaatggctcagcagagaaaacagagctgaactcaaggcttgctgaaggaaac
aaattgcagggcttgaaaaactcatcaacggcagacgggttggatgatgataaatggaaa
aatgagcacgcagtcgacaatcctgaagaaattgcttcaatggttgatatgaccataaaa
aatagtacagcaaggagaaacttgggatatttctcgtgtggaacagggaatccaatcgat
gactgttggagatgtgaccgacgatggtatcgtaggagaagacgccttgcaagctgcggc
attgggtttggacgcaatgctattggtggtcgtgatggaaggtactatgttgtgactgac
cctggcgatgataaccctgtgaaccccaaaccaggaaccctccgccatgctgttatccaa
gacaggcctctttggatcgtgttcaagcgtgacatggtgatcacgttgaagcaggagctg
ataatgaacagttttaagacgattgacgctcggggcgtcaacgtgcatattgcttacggg
gcctgtatcaccatccagtatgtcaccaacattatcatccatggactccacattcatgat
tgcaagcccacaggcaacgccatggtccgtagctccccttctcattacggatggagaacc
atggctgacggtgatggcatttcaattttcgggtcgagttacatctggatcgaccacaac
tcgctgtctaattgtgccgatggacttatcgatgctgtaatgggatccactgcgatcaca
atctcaaacaactacttcacccatcacaatgaggttatgctgttgggacatagtgactct
tatgtaagagacaagcagatgcaagtcaccattgcttataatcatttcggtgagggcctt
atccagagaatgccaaggtgtagacacggatatttccatgtcgtaaacaatgactacacg
cactgggaaatgtatgcaattggtggaagtgcaaatcccaccattaacagccaaggcaac
cgttaccttgcccctgttaatccctttgctaaggaggtgacaaagagagtggacacatat
agtgatgaatggaaacattggaattggaggtcggagggagacctgttgttgaatggagct
tatttcactccatcaggtgctggaagagctgccaactatgccagggcctcgagcttgagc
gccaaatcgtctttcttggtcggcacccttacttcgaatgcaggtgcccttgcctgccgc
ccaggccgcatgtgctaa
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