Gossypium hirsutum (upland cotton): 107924399
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Entry
107924399 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 35A isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107924399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107924399
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
107924399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Urb2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
107924399
NCBI-ProteinID:
XP_016710323
UniProt:
A0A1U8LAC1
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Position
A11:4175018..4182112
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AA seq
795 aa
AA seq
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MIADGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSRLSPHKY
YELYMRAFDELRKLEMFFKEETRRGCSIVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRGIQHPVRGLFLRSYLAQVSRDKLPDIGSEYEGDADTVVDAVEFVL
QNFTEMNKLWVRMQHQGPTREKEKREKERSELRDLVGKNLHVLSQIEGIDLDMYKETVLP
RVLEQVVNCKDEIAQYYLMDCIIQVFPDEYHLQTLDVLLGAFPQLQPTVDIKTVLSRLME
RLSNYAASSADVLPEFLQVEAFSKLNNAIGKVIEVQPDMPILGVITLYSSLLTFTLHVHP
DRLDYADQVLGACVKKLSGKEKLEDKKATKQIVALLSAPLDKYNDIVTALKLSNYPRVME
YLDSETNKVMATVIIQSIMKNKTRISTADRVEALFELIKGLIKDLDDAFHDEVDEDDFKE
EQNSVARLIQLLHSDDPEEMFKIICTVRKHILGGGPKRLPFTVPPLVFSSLKLVRQLQGQ
EENPFGEEESTTPKKIFQVLNQTVETLSNIPAPELALQLFLQCAEIFIDQAANDCDLEPV
AYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLK
KPDQCRAVYACSHLFWVDDQDNVKDGERVLLCLKRALRIANAAQQMSNAARGSAGSVTLF
VEILNKYLYFFEKGNPQITVAAIQSLIELITTEMHSDSSTLDPAADAFFASTLRYMEFQK
QKGGAIGEKYEPIKV
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcagacggagtcgaagatgaagagaaatggctcgccgccggcattgctggcctc
caacagaacgctttctacatgcatcgcgctttggattcgaacaatctcagagatgctttg
aagtactctgctcagatgttatcagaacttcgaacctcaaggctttcccctcacaaatac
tacgaattatatatgcgagcatttgatgaattgaggaagctggagatgttctttaaggaa
gagacaaggcgtggttgctctattgtcgatctgtatgagttagtacaacatgctggcaat
atattgccaagattgtatctcctctgtactgtaggctctgtttatattaaatccaaagaa
gctcctgctaaggatgttcttaaagatcttgttgaaatgtgccgtggaattcagcatccc
gtacgtgggctctttcttaggagttacctggctcaagttagcagggataaattgcctgac
ataggttctgagtatgaaggggatgcagacactgtcgtggatgctgtggaatttgtgctt
caaaactttacggagatgaacaagttgtgggtgcggatgcagcaccagggacccacccga
gaaaaggagaaaagagagaaagagaggagcgagctaagagatcttgttgggaagaatctt
catgtgctcagtcaaatagagggtattgaccttgatatgtacaaagagactgttcttccc
cgtgtacttgaacaggttgtcaattgtaaagatgagatagctcaatactatctaatggat
tgcataattcaagtctttcctgatgagtaccacttgcaaactcttgatgttttactgggt
gctttcccacaacttcagccaactgttgacatcaaaaccgtgctatctcgattaatggaa
aggctatcaaattatgctgcttcaagtgcagatgtgttgcctgagttcttgcaagtggaa
gctttttcaaagttgaataatgccattggaaaggtgattgaagtacagcctgatatgcct
atccttggtgtgataactctatattcgtctcttcttacatttactctccatgtccatcct
gacaggcttgattatgccgatcaagttttgggagcatgtgttaaaaaactctctggcaaa
gaaaagctcgaagacaagaaagcaacaaaacagattgttgcactcttaagtgctccactt
gacaaatacaatgacattgttacagccttgaagctttcaaattatcctcgtgttatggaa
taccttgacagtgaaacaaataaagtcatggcaactgtgataattcaaagcattatgaag
aacaaaactcgtatctctactgctgacagggttgaggcgttgtttgaactgataaaaggt
cttattaaggacctggatgatgcttttcatgatgaggttgatgaagatgatttcaaggag
gagcagaattctgtagcacgtcttattcagttgttgcatagtgatgaccctgaagagatg
tttaagataatatgcacggtgaggaagcatatcttgggtggaggaccaaaacgcctaccc
ttcactgtccctccccttgttttctcttcacttaagttggttcggcaactacaaggccaa
gaggaaaatccttttggagaggaggaatcaactacgcccaagaaaatattccaggttttg
aatcagactgttgaaactctctctaacattccggcccctgagctggcactacagttgttt
ctgcagtgtgctgagatttttattgatcaggctgcgaatgactgtgatttagaacctgtg
gcatatgaatttttcacacaagcttacattttatacgaggaagagatttcagactcaagg
gcacaggttactgctatacatttaataattggaactctgcagaggatgcatgtctttggt
gttgaaaatagggatactttaacacacaaggctacagggtattctgcgaaacttttgaag
aagcctgatcagtgcagagctgtttatgcatgctcgcatctcttctgggttgatgatcaa
gacaatgtaaaagatggagagagggtcttgctttgccttaagcgggcactgagaattgca
aatgctgctcaacaaatgtcgaatgcagcacgaggtagcgctggatcagtcactctcttt
gttgagatactgaacaagtacctttatttctttgagaaggggaacccccagatcactgtt
gctgcaatccagagtctgattgaattaataacaaccgagatgcatagtgactctagcaca
ctagatccagcagcggatgctttctttgccagcactctcagatatatggagtttcagaaa
cagaaaggtggagctataggtgaaaaatatgaacctatcaaggtgtga
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