Gossypium hirsutum (upland cotton): 107924453
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Entry
107924453 CDS
T04793
Name
(RefSeq) RRP12-like protein isoform X1
KO
K14794
ribosomal RNA-processing protein 12
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107924453
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Other 90S particles
107924453
Pre-60S particles
Other pre-60S particles
107924453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_RRP12_N
RRP12_HEAT
HEAT_GCN1
HEAT_Maestro
RIX1
Motif
Other DBs
NCBI-GeneID:
107924453
NCBI-ProteinID:
XP_016710400
UniProt:
A0A1U8L723
LinkDB
All DBs
Position
A11:122010942..122021209
Genome browser
AA seq
1179 aa
AA seq
DB search
MKKKQIPNSPLDDKETPKEIDNENEIPLEDGSDICQQLMDRYSKSSAPQHRHLIATAAAM
RSILSSESLPLSPPAYFAASISALDDDSAATLDSTAIGALLTFLSLVVPAVPKGGIASGK
AKEAVEVVVRVLGKEGLGVASLRSGVKCLGLLLVGFSDLQDWHSVQFGLESLLGFAIDKR
PKVRRCAQEYLEKFFKSLQSSDVMKEASKLVLSLLKSHMPVALTLNTIKSADDSKDETLS
NPEHLEVLHMLNVLKLTVPYLSATIRLKILSELCKLTSSEFSILTRNIHKTIEVFFGNSN
AEAIIPATENIIVSLSSYVSGEKNPVDTLISAATLLKCAVDKLYAVDSNSWTKHTPFVYD
SLAALLSSEASVASHASDIMKELITDHIDLKSLSSDNNGLGSEEADALKSICSIFENTLS
SSDGIPNEHVLAVLTVLFQKLGESSYIFMKGIVHKLADLMTRTSGNTSNTNHLQNCVGSA
VTVIGPERMLTLLPITLSVDNLMHSNMWLVPILKDYVVGASLSYYMEHIVPLAKSFQEAS
CKVKKSVIRQDLQAHSHSLWGLLPAFCRYPIDTHKRFKALAELLIDILKEDSLMHENIAV
AIQILVNQNKNILRSGEDADESNNTVMGDSKLELRIPDTYSKKTATKNIKALSSCAPEIL
QALTDVFIHSIPAKRLYLKDAIGCLASITDSSITKRIFVLLVEKLQSIDGEGEFVKQADN
ADEVVEKEKNTNTMGKDASRCIIMELASSLISGAEEDLIDFIYVLIKQTFQETNEIGHHE
AYYALSRILEEHAWFCSSKSEELIDLLLGLKSPADTPSLRNRLDCFNTLMVHTLKVSSLE
ENTKPFLILNEIIVTLKDGKEETRKTTYDILLKMSSTLRKSSDLESDPPYHKLISMIMGY
LSGSSPHIKSGAVAALSVLVYDDPEICISVPDLVSSILSLLQTKAVEVIKAVLGFVKVLV
STLQAKDLQNFLSDIINGVLQWSSISRNHFRSKVTIILEILTRKCGIAAVQSVAPEKHKG
FLNTVIENRRGKTTSEETDVNDADKVPVGSSTEGSRKRRDKRFGAFKSKNDMIEHRKRKR
DKRDGGSKHAKSSEHVGHGGGMKMAKRAKHLGNSMKDHSEGNGKKKNFDKGSSTGRGQKR
KINQATTSQKGEAAGDKRHSFKVQTRPKKFRGVNKKGDK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaaacaaatcccaaattccccgttagacgataaagaaaccccgaaggaaatc
gacaacgaaaacgaaatccctttggaagatgggtccgatatctgtcagcaactcatggat
cgttattcaaaatcatcagccccgcagcatcgccacctaatcgccactgctgccgcgatg
cgttccatcctttcatctgagtcgcttcctttatctccgccggcttactttgctgcatcc
atttctgccctcgatgatgattcagcagccacccttgattcgacggctatcggtgcgctt
ctgacgttcttgtcgcttgtggttccggcggtgccgaaaggagggattgccagtgggaag
gcaaaggaggcggtggaagttgtggtgagagtattggggaaggagggattgggagttgcg
agtttgagaagtggggtgaagtgtttggggttgttgcttgtcgggttttctgatttgcag
gattggcactcggttcagtttggtctagagtcattgcttggattcgccattgataaacga
cccaaggttcggagatgtgctcaagaatatcttgagaagttttttaagtctttacagtcc
tcagatgttatgaaggaggcaagtaaattggtactttccttgctaaaaagccatatgcct
gttgcacttaccttaaacaccataaaaagtgcagatgattctaaggatgaaacattatcg
aatcctgaacatttggaggtccttcatatgttaaatgtgctgaagcttactgttccatat
ctctctgccacaatccgtttgaaaattttatcagaactatgtaaacttactagttctgag
ttctctattcttacacggaacattcataaaaccattgaagtattttttgggaactcaaat
gctgaagcgattataccagcgacggagaacattatagtttctctttcttcttatgtctct
ggggagaagaatcctgttgacactctcatatctgccgcaactttgttaaaatgtgctgta
gataaactttatgctgtagactcaaactcctggacgaagcacactccttttgtttatgat
tcattagcagctcttttgtcttctgaggctagcgtggcatcacatgcatcagatattatg
aaggagttgattaccgaccatatagatctgaagtctctttcatctgataacaatggcctt
ggtagtgaggaagcagatgcattaaaatctatatgttcaatctttgagaataccctaagt
tcaagtgatggaattccaaacgagcatgttttggctgtcttgactgttttgtttcagaaa
ctcggagaatcctcatatatatttatgaagggcattgtacataaacttgctgacttaatg
actcgcactagtgggaacacatctaacacaaaccatcttcagaattgtgtaggatcagca
gttactgttatcgggccagagaggatgctgactcttttgcctataaccctttctgttgat
aacttaatgcattcaaacatgtggttggtacccatattgaaagactatgtcgttggagca
tctcttagctattatatggagcatatagtgccacttgcaaaatcctttcaggaagcaagt
tgtaaagtaaaaaagtctgtaattcgtcaagatctgcaggctcacagtcatagcctctgg
ggattactacctgccttttgtcgttatcctattgatacacacaagaggtttaaagctttg
gctgaacttttaattgatattcttaaggaggactcgcttatgcatgaaaatattgctgtt
gccatacagattcttgtcaaccaaaacaaaaatatacttagatctggagaggatgctgat
gaatcaaacaatactgtaatgggagactctaaattagagctcagaattccagacacttat
tcaaagaaaactgcaaccaaaaatatcaaggcattatcatcatgtgctccggagattctt
caggctctaactgatgtatttattcattccattccagcaaagcgtttatatcttaaggat
gccattggatgcttggcttcaataacagactcttctattaccaaaaggatttttgtgtta
ttggttgagaagctgcagtccattgatggtgaaggtgaatttgtaaagcaagctgataat
gcagatgaggtggtggaaaaagaaaaaaacactaatactatgggtaaagatgcaagcagg
tgtatcataatggagctggcatcttctcttatttcaggggcagaggaggaccttattgat
tttatctatgtcttaataaagcaaactttccaggaaacaaatgagatcggtcatcatgaa
gcatattatgctttaagcagaattttggaggagcatgcttggttttgttcttctaaatcg
gaggagttgattgatctattacttggcctaaaatctccagctgatactccatctcttaga
aaccggcttgattgcttcaacacgctaatggttcataccttgaaggtgagctcattggag
gaaaatacgaagccattccttattcttaatgagattatagtcacattgaaggatggaaag
gaagaaacaaggaaaacaacttacgatatattactaaagatgagttctaccttaagaaag
tcgtcagatctcgaatctgatccaccctatcacaaactgattagcatgataatgggatat
ctttctggttcatcacctcacattaagagtggagcagtggctgccctgtctgttctcgtg
tatgatgatcctgagatatgtatctcagtgcctgatcttgtttcttctattttatccttg
ttgcaaaccaaagctgtggaagttataaaagctgttttgggttttgtaaaagtcttggtt
tccaccttgcaagctaaagacctgcagaattttctttccgatattatcaatggagttcta
cagtggtcatctatctcgagaaatcatttcagatcaaaggtcactataatactggaaatt
ttgacaagaaagtgtggtattgctgcagttcaatctgttgctccggaaaagcacaagggt
tttctgaataccgttatagagaaccgacgtggcaaaacgacttctgaagaaactgacgtc
aatgatgcagacaaagtacccgtgggttcatcaaccgaagggtctcgaaagaggagagat
aagcgattcggtgcttttaaaagtaaaaacgacatgatcgaacaccgaaagagaaaaagg
gacaaaagggatggtggcagcaagcacgccaaatcaagtgaacatgttggccatggtggt
ggaatgaaaatggctaaaagagctaagcacttaggaaattcaatgaaggatcattcagaa
ggaaatggtaaaaagaagaatttcgacaaagggtccagcaccggcagaggtcagaagaga
aagataaatcaggcaactacgagccaaaagggtgaggcagctggtgataaacgacattct
ttcaaggtacaaactcgacccaagaaatttagaggggtaaataagaaaggtgacaagtaa
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