KEGG   Gossypium hirsutum (upland cotton): 107924883
Entry
107924883         CDS       T04793                                 
Name
(RefSeq) exonuclease 1 isoform X1
  KO
K10746  exonuclease 1 [EC:3.1.-.-]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    107924883
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ghi03032]
    107924883
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107924883
DNA replication proteins [BR:ghi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    107924883
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Other MMR factors
     107924883
SSDB
Motif
Pfam: XPG_N XPG_I XPG_I_2 TPR_1 MIT TPR_8 TPR_2
Other DBs
NCBI-GeneID: 107924883
NCBI-ProteinID: XP_016710945
UniProt: A0A1U8L8L6
LinkDB
Position
A10:2982227..2988102
AA seq 691 aa
MGIQGLLPLLKSIMVPIHIKELEGCSVAIDTYSWLHKGALSCSNQLCKRLPTSRHIEYCM
HRVNLLRHHGVKPVLVFDGGLLPMKIEQENKRARARKENLARAVEHESCGNSAAAYECYQ
KAVDISPSIAHELIMVLKRENVCYVVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGCP
RVIFKMDKFGQGVEFKSSMLQQNKELSFAGFTKQMLLEMCILSGCDYLHSLPGMGLRRAH
ALMKKFKSHDKVIKHLRYSTVSVPPLYEESFKKAILTFQCQRVYDLITEDIVHLSDISDN
IGDDLDFLGPLIPQQIAQGIARGDLDPFTQMPFQAVSDSSQLALDRNLRLKSFKPESERK
RLDLPVQKNLLTNYFCLASVEAKRNFKAPRVSPKHSSPVANSSTSPESDKDITVEDGSCQ
IDTLFSASPDFKNTNSIEENGFITKLPEYSESSNPDIEAKVDTTRSPDHVLPLESDWPTI
RPPTASDKEHDNNTVPDAAKSKTIADSRKGIVTSRYFQKKQVDINDQEDKQGKNCCRGGI
TNQFPETGNLDGYGNTYSKGMASKRKNSFEYVETENVNPKQIYTDASCDGNADCGPNLET
FGETKTGEAKFGSNISHLGRYSDVAEKSMERFVSVISSFRFSSPGSRASGLRAPLKDARN
TCNNRPSAAVDFNQFAYVPKNKKAKLASRRF
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgggaatacaagggcttttgcctctattgaaatcgattatggtaccaatccatatcaag
gagcttgaaggctgtagcgtagctattgacacctattcttggctccacaaaggagccttg
tcttgcagcaatcagctctgtaaacgattacccacctccaggcacattgagtactgtatg
catagggtaaatttgctgcgacatcatggtgttaaaccagttctcgtctttgatggaggt
cttcttccaatgaagattgagcaagagaacaagcgtgcaagggcaaggaaggaaaatctt
gcacgagcagttgaacatgagtcatgtgggaattctgctgctgcttatgagtgctaccaa
aaagctgttgacatttcaccttcaattgcacatgaactaatcatggtcttgaagcgggag
aatgtttgttatgttgtggcaccttatgaggcagatgcacaaatgactttcttggccatt
agcaaacaggttgatgcagttatcaccgaggattctgatcttataccctttggctgtcct
agagttatctttaaaatggataagtttgggcaaggtgttgagttcaagtcttccatgcta
cagcaaaacaaggagctaagctttgctggattcactaaacagatgctgcttgaaatgtgt
atcctaagtggttgtgactatttgcattcactgccaggaatggggctcagaagggcccat
gcacttatgaaaaaattcaaaagtcatgacaaggtgattaagcacctgaggtacagcact
gtttcagttcctccgttgtatgaagaatcattcaagaaagcaatattaacatttcagtgc
caacgagtctatgatctgatcacagaagatattgtgcatttatctgacatatctgacaac
attggtgatgatttggactttttaggcccgctgataccccaacaaatagctcaaggcata
gcaagaggtgatcttgatccatttactcaaatgccatttcaggctgtaagtgatagttct
cagctggcacttgatagaaatttacggctgaaaagttttaaacccgagagtgaaagaaaa
aggctagatttgcctgtgcaaaagaacctcctgaccaactatttctgccttgcatctgtt
gaagcaaaaagaaacttcaaggcccctcgagtatcacctaagcattcaagtccggttgct
aattcttctaccagtcctgagtctgacaaagacattactgtggaagatggttcttgccaa
attgataccctgttttcagcctctcctgacttcaagaatactaacagcattgaagaaaat
ggtttcattaccaagctccctgagtattcagaatcttcaaatcctgatatagaagccaag
gtggatacaacgagaagccctgaccatgtgttgccactagaatctgactggccaacgatc
agacctcctacagcttcagacaaagagcatgataataacactgtcccagatgcagctaaa
agcaaaacaatagcagatagcagaaagggcattgtaacaagtcgttactttcagaagaag
caagtcgacataaatgatcaggaagataaacaaggaaaaaattgttgcaggggtggtatt
accaatcagtttcctgagactggcaatcttgatggttatgggaatacctattctaaggga
atggcttcaaaaaggaagaactcctttgaatatgttgaaacagaaaatgtgaatcccaag
caaatctacactgatgcatcctgtgatggtaacgctgattgtggtcctaatcttgaaaca
tttggggagacaaaaactggagaggcaaaatttggatccaacatttcacatttaggccgt
tattctgacgtagcagagaaatccatggaaagatttgtttcagtaatatcatcatttaga
ttttcatcacccggttctcgtgctagtggtcttcgagcacctttgaaagatgctcggaac
acatgtaacaacaggccatctgctgctgtggattttaaccagtttgcttatgttccaaaa
aacaagaaggccaaattagcatcgcgtagattttga

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