Gossypium hirsutum (upland cotton): 107925028
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Entry
107925028 CDS
T04793
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107925028
09124 Replication and repair
03420 Nucleotide excision repair
107925028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107925028
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107925028
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107925028
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107925028
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
107925028
NCBI-ProteinID:
XP_040935439
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All DBs
Position
A10:complement(2279016..2283577)
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AA seq
451 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAIKLDLLYRNQFICEAILRSLPPLAKKYVLQMLYIDIPITS
KSLQEWLLADGSSKHKVAIDRLIQLRVFEVIDRKKETTYKLNSTFQTNLRKHMISGGILP
REPMPQSVTARLPTSEELDAYAHEQWECFLLQLISSGQAEKSTSFSSSMMRIFQRGLLRQ
RDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTPGEA
YSLDTLTDDQTTMIKDLADLGLVKLQKGRKESWFIPTKLATNLSVSLTDSSSRKQGFVVV
ETNFRMYAYSSSKLHCEILRLFARVEYQLPNLIVGAITKESLYNAFENGITAEQIVTFLQ
QNAHPRVAAKIPSVPENVTDQIRLWETDLNRVEMTPAHFYDEFPSRDVFEAASDFARMHN
GLLWEDAKKMRMVVKAEIHMLMREHLRGQNK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaagattatcgccaagaatttcatggacatggtggcttcattgcccgcc
attaagctcgatttgctctatcgtaatcagttcatttgcgaagccattctcaggtcgttg
ccgccgctggcgaagaaatacgtgttacaaatgttgtacatcgatattcccataacatcc
aagtcgttgcaggagtggctgctcgctgatggatcatctaagcacaaagttgcaatcgat
cggttgattcagctaagagtatttgaagtaattgatcggaaaaaggaaaccacttacaag
ttaaattccacgtttcagactaatctccgaaaacatatgatatctggtgggattttgcca
agagaaccaatgcctcaaagtgttactgcaaggcttccaacctcagaggagctcgatgcc
tatgcacatgagcaatgggagtgtttcttgctgcaacttataagttcaggacaagccgaa
aaatcaacgagcttcagctcttccatgatgagaatttttcagcgtggtcttttgcgtcag
agagataaagaagctccaagattaaccgagagtggtttccaattcttgttgatggataca
aatgctcagctttggtatattatcagagagtatatctccaattcagaggagcaaggtgta
gatcaagcagacttaattgcttttttgctagaacttagttttcatacccctggtgaggca
tatagtttagatacactgactgatgaccagacaactatgatcaaggaccttgcagacttg
ggattggtcaaacttcagaagggcaggaaagagagttggtttatacctactaaattagcc
accaatctttcagtgagcttaacagattcatcatcaagaaaacagggatttgttgttgtg
gaaacaaactttaggatgtacgcatactcatcatctaagttgcactgtgaaattttacgt
ctattcgcaagggtagagtatcaacttccaaacctcatagttggtgcaataacaaaagaa
agcctctataatgcttttgaaaatggcattactgcggagcagatagttacattccttcag
cagaatgcacatcctcgagttgctgcgaaaataccatcggtacctgaaaatgtcacggat
cagataagattgtgggaaactgatttgaatagagttgagatgactccagctcatttttac
gatgaatttccttcgagggatgtctttgaggctgcttccgactttgctcgtatgcataat
ggtttactatgggaagatgctaagaaaatgcgtatggttgtcaaggcagagattcatatg
cttatgcgcgagcatcttcgtggtcaaaacaagtag
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