Gossypium hirsutum (upland cotton): 107925085
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Entry
107925085 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107925085
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107925085
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107925085
Membrane trafficking [BR:
ghi04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
107925085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
EXOC6_Sec15_N
Motif
Other DBs
NCBI-GeneID:
107925085
NCBI-ProteinID:
XP_016711138
UniProt:
A0A1U8LCM9
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Position
A10:388429..398843
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AA seq
991 aa
AA seq
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MDLQPSPSGRSSTVGRISSFSVADSGGQTLSSVLNNPHAGKLEASWGWWSVAPPEFAPLA
STKAACDLTRSDFQSYVSSISDSYYRFEDIRNHTTKEQTLDVDNIGEALVACLREVPALY
FKEDFALEDGGTFRAACPFTDVSENIMLQEKLSHYLDVVELHLVKEISLRSNSFFEAQGQ
LQDLNVKIVEGCNRIRDLKETIRLVDTDLVDSARQIQELNATRTNLLALQHKLKLILSVN
QALSALKLLVASSECAGALDIIDDLQHLLDGDELSGLHCFRHLRDHVVTSIDSINSILSA
EFMRASIHDKGDKDSVILLKAKARASISLNGEDVGVNLDEEETTNFRDRLLPLIIGLLRT
AKLPFVLRTYRDTLTADMKTAIKTAVAELLPVLVGQPPESDMGAEHTVDADGGGLSLASK
LRSLSSGSFVQLLATIFKIVQAHLVRAAEVKRAIEWVMCNLDGHYAADSVAAAIALGAMV
AESSQESNGQGGALPLSASLRSTSKVLSSPGKGSDAISPSNLSKNFRVDVLRENAEAVFA
ACDAAHGRWAKLLGVRALLHPKLRLQDFLSIYNITQEFITSTEKVGGRLGYSIRGTLQSQ
AKSFVDFQHESRMTKIRAVLDQETWVEVDVPDEFQAIVSSLFDSEAIVSGSKDNAESNMT
ESYSNEGSQVGSVAQNEPTDSSSTTAVNAAQGKAEVIERKKSDAVTSSQSNNSNTKERGK
NATQTLEYGGVSYHMVNCGLILLKMLSEYIDMNHLLPALSLEVVHRVVEILKFFNTRTCQ
LVLGAGAMQVSGLKSITSKHLALASQVISFIYAIIPELRQILFLKVPEPRKSLLLSEFDR
VAQDYKVHRDEIHTKLVQIMRERLLVHLRGLPQIVESWNRPEDADPQPSQFARSLTKEVG
FLQRVLSRTLHEVDVQAIFRQVVVIFHSQISDAFSRLEIGTPQAKDRLHRDITHILGCIR
SLPSDNSNNSATPNWGQLDEFLAQRFGAEAS
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggatctacagccttccccatcgggaaggtcatcgacagttggtcggatctcttcattt
tccgtcgccgattcgggtggccaaacgctttcttcggtccttaacaaccctcatgctggc
aaattggaagcttcttggggttggtggtcggtcgcgccgcctgaattcgctcctttggcg
tccaccaaagcggcttgcgaccttacccgatccgacttccaatcatacgtctcttccatc
tccgattcctattatcgattcgaggatattaggaatcacaccaccaaggagcagactctc
gatgtcgataacattggggaagcccttgtagcttgtttaagggaggttcccgccctttat
tttaaggaagatttcgcgctcgaagatgggggtaccttccgggcagcctgcccttttact
gatgtttctgaaaacatcatgcttcaggagaaattgtcccattacttggatgttgtggag
cttcatttggtgaaggagatttcgttgcgctccaattctttcttcgaagcgcaagggcag
ttgcaggacttgaatgttaagattgtggaaggatgcaatcggattcgtgatttgaaggaa
actattcggctcgtagacactgatttggttgactctgctaggcagattcaggagttgaat
gccactaggaccaatttgttggctctccaacataaattgaagcttattctatctgttaac
caagccttatccgctcttaaattgcttgttgcatcttcagagtgtgctggagctttggat
attatcgatgatctgcaacacttactggatggggatgagctttctggtttacattgcttt
cgtcatcttcgagatcatgtagtcacttctatagattccataaacagtattctttcagca
gaatttatgcgtgcttcaatacatgataagggggataaagattcagttatattgttgaaa
gcaaaagccagggcatccatttccttgaatggcgaggatgttggagttaacttggatgag
gaagaaaccaccaattttcgggatcgtcttctgcctcttattattggtttgcttcgaact
gccaagctcccatttgtcctaaggacatatcgtgatacacttactgctgatatgaaaact
gctattaagactgctgttgcagagctgcttccggttctggtgggccaacctccggaatct
gatatgggtgcagagcacactgtcgatgcagatggtggaggcttatcacttgctagcaaa
ttgaggagtttgtcatctggaagctttgtccaacttctggctactattttcaagattgta
caggcacatttagtccgggcagctgaagtaaaaagggccattgagtgggtaatgtgcaac
cttgatggtcattatgctgctgattcagtcgctgctgcaattgcacttggtgccatggtt
gcagaatcttctcaagagagtaatggtcaaggtggtgcacttcctctgagtgcttcttta
aggagtacatccaaggttctttcatccccagggaaaggaagtgatgcgataagcccctca
aatttatcaaagaatttcagggtggatgttctgagagaaaatgctgaagcggtctttgca
gcttgtgatgctgctcatggaagatgggcaaagctacttggcgttcgtgctcttcttcat
cctaagctaagattgcaagactttctgagcatatataatatcactcaggagtttataact
tctacagagaaggttggtggaaggttgggatatagcatcaggggaacactgcagtcacag
gctaaatcctttgttgatttccagcatgaatctcgaatgacaaaaatacgagcagtgctt
gatcaagagacatgggtagaagtagatgttcctgatgaatttcaggcaattgtttcttca
ctgtttgattctgaagcaatagtttctggaagcaaggataatgctgaaagtaatatgaca
gaaagctacagcaatgagggttcacaagtaggttctgtggcgcagaatgaaccaactgat
tctagtagcacaactgcggtaaatgctgcccaagggaaggctgaggtgattgagagaaag
aaatctgatgcagtaacttcatctcagagtaataacagtaatacaaaggaacgtggaaaa
aatgctactcaaacacttgaatatggcggtgttagttatcacatggttaactgtggctta
atattgctgaaaatgctgtcagagtacattgacatgaatcatcttctgccagcactatcc
ttggaggtggttcatcgtgttgtggagattctaaaatttttcaacacgagaacatgccaa
cttgttttaggtgctggagccatgcaggtttctggtttgaagtccattacttctaaacac
ttggccttggcaagtcaagtcattagtttcatatatgctatcattcctgaattgaggcaa
atcctgttcctcaaagttcctgaacctcggaagtcacttctgctgtcagagtttgatcga
gttgcacaggattataaggttcaccgggatgaaattcatacaaagcttgttcagataatg
agagagaggttgttggttcatctgcgtggactaccccagattgttgagagctggaataga
ccagaagatgctgacccacagcccagtcaatttgctaggtctctcactaaggaagttggg
ttcctccaacgagttttatctcgtacattgcatgaagtagacgttcaagcaattttcagg
caagttgttgtaatcttccattcacaaatttcagacgcattttcacgcttagagatcggc
actccccaggcaaaagatagactgcaccgcgatattacacacattcttggatgcattcga
tcattgccttctgataattcgaataattctgctaccccaaactgggggcaactggatgag
ttcttagcacaaaggttcggggccgaagccagttga
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