Gossypium hirsutum (upland cotton): 107925142
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Entry
107925142 CDS
T04793
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107925142
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107925142
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Complex C specific factors
107925142
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Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107925142
NCBI-ProteinID:
XP_016711211
UniProt:
A0A1U8L9C4
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Position
A10:2782034..2788106
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AA seq
543 aa
AA seq
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MMDDPLLTKYSVIMVDEAHERSISTDIVLGLLKKIQKRRPELRLIISSATIEAKSMSNFF
LSSKRRQALEGEELRPGLEPAILSVEGRGFNVQIHYVEDPVRDYVQAAVSTVLLINDKEP
PGDILVFLTGQDDIDAAIKLLTEEARSNGKNSSGLIILPLYSGLTRAEQDLIFSPTPKGK
RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAG
RLRPGKCYRLYTEEYFLNEMSMQGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPE
SMIRALEVLYSLGVLDDDAKLTSPVGFQVAEIPLEPMIAKMILSSNELGCSDEIITIAAV
LSIQSIWFSARGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSGKSSKWCHKNFINYHA
MKKVMEIRELLRRIALRLGIVLKSCETDMQLVRKAVTAGFFANACRLEAYSHGGMYKTIR
GSQEVYIHPSSVLFRVNPKCVIYHSLVSTDRQYMRNVMSIDPSWLTEVAPHFYQQQRHNP
TIH
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgatcctcttttgactaagtacagtgtcattatggtggatgaggcgcatgaa
agatccatttcaacagacattgtacttggtcttctgaaaaagatccagaaacgtcgaccg
gagctgcgactgattatatcttctgctacgattgaagcgaaatcaatgtctaatttcttc
ctgtccagtaaaaggcgccaagcattggaaggtgaggagcttagacctgggttggagcct
gctatcttatccgttgagggtagagggtttaatgtgcaaattcattatgtggaagaccct
gtacgagactatgttcaggctgctgtttcaacagttctattgattaatgacaaggaacca
ccaggtgatattttagtatttcttactggtcaagatgatattgatgctgctatcaagttg
cttactgaagaagctcgaagcaatgggaaaaattcctcagggttgattattttgccttta
tactctggacttacacgtgcagaacaggatttgatattttctccaactcctaaaggcaag
agaaaagtagtgatatcaacaaatatagcagagacatcattgactttagagggtattgtc
tatgttgttgatagtggcttctcaaaacaacgattctacaatccgatctcggatatagaa
aatcttgtggtggcacccatatccaaggcatctgctagacaaagggctggtcgagctggt
agacttagacctgggaagtgttacagattgtatacagaagagtattttctcaatgaaatg
tctatgcaaggaattcctgagatccaaaggtcaaatcttgtttcttgtgtgattcagtta
aaagcattaggcattgataacattctgggctttgactggccggcatctccatctcctgaa
tcaatgatccgagcacttgaagtactttattcacttggagtccttgatgatgatgccaaa
cttacttcaccagttggttttcaagttgcagaaattccactggaaccaatgatcgcaaaa
atgattttatcttcaaatgagcttgggtgttctgatgaaatcataactattgctgctgtt
ctctctatccagtctatctggttttctgctcgaggagcacaaaaggaactggatgaagcc
aaattgagatttgctgctgctgagggtgaccatgttactttcctgaatatttacaaaggg
tttctccagtctggcaaatcttcaaagtggtgtcacaagaacttcataaactaccatgcc
atgaaaaaggtaatggaaattcgggaactactcagaagaatagcgctgaggttgggcata
gtcttgaaatcttgcgaaacagatatgcagttggtgagaaaggcagtcactgctggtttt
tttgctaatgcatgccgtttagaggcctacagtcatggtgggatgtacaagactattaga
ggttcccaagaagtttatattcatccatcatctgtgttattcagagtaaatccaaagtgt
gttatataccattctcttgtctccaccgaccggcaatacatgcgcaacgttatgtccata
gatccttcttggttaactgaggttgcaccgcatttttatcagcagcaacggcacaatcct
actatccactga
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