KEGG   Gossypium hirsutum (upland cotton): 107925178
Entry
107925178         CDS       T04793                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1-like isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ghi04812]
    107925178
Cytoskeleton proteins [BR:ghi04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     107925178
SSDB
Motif
Pfam: Katanin_con80 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd eIF2A Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_IP5PC_F Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 107925178
NCBI-ProteinID: XP_016711268
UniProt: A0A1U8LD19
LinkDB
Position
A10:complement(2076110..2082910)
AA seq 987 aa
MSKRGYKLQEFVAHTTSVNCLSMGKKTCRLLITGGDDHKVNVWAIGKPTSLMSLCGHTSP
VESLAFDSAEVLVLAGSSTGGIKLWDLEETKMVRGLTGHRSNCTALEFHPFGEFFVSGSM
GTNLKVWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKIWDLTAGKLLNEF
KFHEGHIRTIDFHPLEFLLATGSADRTVKFWDLETFELIGSSRPEATDFRSIAFHPDGRT
LFCGADDGLKVYSWEPVVCHDSVDMGWSTLGDLCINEGKLLGCSYYRNSVGVWVADIAHI
EPYGRNNQTEKKFNLERSYSSVKAGNGMRSTLGSRPLSPDCETKEIKNIYIDTAGSNPIA
TQKDGSLNSPKVLPPMDACEISDQEAVKKSPGTEVNAKPSVVPRDNPIGKNSSNSAKESI
TFSKTKPGMLLKPAHVRRPSVNKFEVEKLSATVDSGTPGNVKSGLDNATDLNSQSRLVSE
DGVRKSCDEKDSNIQSVIEKSEKVLSPQTPPNQETCYESLTCSKDSNSVKIVRGVAVVSG
RTRTLVEKFERRERLNSGDGPVTNDTPPLVLETDRTPTKMKEERQISETKAISANDVKQG
GSQISRMESTSSCEVSITGIQISRRESTPTSGGLITGDQLPRAELTSTPDKVIIGNQTSR
RESTPTSGGLVTGDQLPRAELMSNPDKVITGNQTSRKESTITPERIIAGNRISRRESNSA
SSGTITGNQISRMKSTSASDSITVNQIMRRESTSTADGMISRNQLSRREAISVNDRSGPN
GTVTENQISRRGLNSANDGNATIIESQVSKGTSISPDDGIITESLMQTHDIFLSTLRSRL
TKLQVVRHFWEKNNIKGAISALQKLPDHSVQVDVISVLMEKMEILTLDLFSGLLPVLKGL
LDSKTDRHVNISLEMLLKLVAVFGPMVRSTVSAPRGIGVDLHAEQRRECCNQCFTQLQKI
LKLLPPFERRGGVIARCAQELNLVLQE
NT seq 2964 nt   +upstreamnt  +downstreamnt
atgtcgaagcgtggatataagctgcaggaatttgtggcgcatacaacaagtgtaaattgt
ctaagtatgggaaaaaagacatgtaggcttcttattactggtggagatgatcataaagtg
aatgtttgggcaattgggaaaccaacttctctaatgagtctctgtggtcatactagtccg
gtggaatctttagcttttgattcggcagaagtcttggtgcttgctggatcatctacaggg
gggataaagctttgggacctggaagaaacaaagatggttcgcgggctaacaggacacaga
tctaattgcactgccttggaattccatccatttggtgagttctttgtatctggttccatg
ggcacaaatctaaaggtttgggatatcagaaagaagggatgcattcatacgtacaagggc
catactcgaggcattagtacaattagattcactcctgatggtcgctgggtagtttctggt
ggatttgataatgttgtaaagatttgggaccttactgctggaaaactcttgaacgagttt
aagtttcatgaaggccatattcgcaccatagacttccatcctcttgagtttctgttagct
acaggttcagcggacagaacggttaaattctgggatttagaaacctttgaactgattgga
tcttccagacctgaggctacagattttcgctcaattgcctttcatcctgatgggagaact
ttgttctgtggagcagatgatggtttgaaggtttattcgtgggagccagtagtttgtcat
gattctgttgacatgggatggtcaacacttggcgacctttgcatcaatgaaggcaaactt
ttgggttgctcatactatcgaaattctgttggagtttgggtggcagatatagcgcatatc
gagccatatggaagaaacaaccaaacagagaagaaatttaatcttgagagaagttattct
tctgtgaaagcagggaatggcatgaggtctactttgggatcacggccattgtctcctgat
tgtgagacaaaggaaataaagaacatatatattgacactgctggtagtaatcctattgcc
acacagaaagatggctctttgaattctccaaaagtgttacccccaatggatgcctgtgaa
ataagtgatcaagaagcagtgaagaagagtcctggaacagaagtcaatgcaaaacctagt
gttgttccaagggacaatcctattggtaaaaactctagcaattctgcaaaagaatccatc
accttttcaaagacaaaaccaggcatgctgctcaaaccagctcatgttaggagaccatct
gtcaacaagtttgaggttgaaaagctgtcggctacagttgattcaggaactcctggcaat
gtaaaaagcggtttagacaatgcaacggatctgaattctcaaagtaggcttgtatcagaa
gatggagttagaaaatcatgtgatgaaaaggactcaaatatccagagtgttatagagaaa
tctgaaaaggtgttatcgccacagacaccccctaatcaagaaacttgttatgaatcgctt
acttgcagcaaagattcaaactctgtcaaaattgtcagaggagtggctgttgtttcaggg
agaacacgtactctggttgagaagtttgaacgaagagagagattaaacagcggtgatggt
ccggtaactaacgatactcctcccctggtacttgaaacagatagaacaccaaccaaaatg
aaagaagagagacaaatctccgaaacaaaagcaatctctgccaatgatgtcaagcagggt
ggaagtcaaatttctagaatggaatcaacttcaagctgtgaggtaagtattaccggaatt
cagatttctagaagggaatcaactcccacttctggtgggctcattactggcgatcaactt
cctagagcggaattaacgtcaactcctgataaggtcattattggaaaccaaacttctaga
agggaatcaactcccacttccggtgggcttgttactggggatcaacttcctagagcggaa
ttaatgtccaatcctgataaggtcattactggaaaccaaacttctagaaaggaatcaacc
ataacccctgagaggatcattgctggaaaccgaatttccagaagagaatcaaactctgct
tctagtggcaccattactggaaatcaaatttctagaatgaaatcaacctctgcttctgac
agcattactgtaaatcaaattatgagaagggaatcaacttccactgcagatgggatgatt
tctagaaatcaactttctagaagggaagcaatttctgttaatgatagaagtggaccaaat
ggtacagttactgagaatcaaatttctcggaggggattgaattctgctaatgatgggaat
gctactattattgaaagccaagtttcaaagggcacatcaatctctcctgatgatggaatc
ataactgaaagtctaatgcaaacacatgatatattcttaagcactcttaggtctcgcttg
acaaaattacaggtggtgcgacatttttgggaaaagaataacattaaaggtgcaatcagt
gccctgcagaagctgccggatcattctgtgcaagtcgatgtaatcagtgttctcatggaa
aaaatggagattcttaccttggatctgttttctggcctgctccctgtgcttaagggctta
ttagatagtaaaacggataggcacgtaaatatctcgttggagatgcttttgaagcttgta
gcagtatttggtccaatggtacgctcaactgtttcagccccacgtggtattggtgtcgat
ttacatgctgagcaaaggcgagaatgctgcaatcagtgtttcacgcagctgcaaaagatt
ctgaaacttcttccaccattcgaaaggagaggtggtgtgatagcaagatgtgcacaagaa
ctgaatctagttcttcaagaatga

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