Gossypium hirsutum (upland cotton): 107925366
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Entry
107925366 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107925366
KO
K19026
spatacsin
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107925366
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
107925366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
107925366
NCBI-ProteinID:
XP_016711520
UniProt:
A0A1U8LA82
LinkDB
All DBs
Position
A12:complement(59944677..59972915)
Genome browser
AA seq
3213 aa
AA seq
DB search
MDRSAGSEGPAILKLHKWGPSGLPLNLSEYREAFISPTRELLLLLSYQCQALLLPLTTGG
SVDTDVSESCHDKSSQNLGLLASRSNLKEDIPSTSGSASDCDDVISLKHGFSRSNGYPFL
CDVNSLAWGMCGDTYNQHKDGSFRELLFVSGNQGVMVHAFSHPDNSSEPAAMLEGEFREG
KWVEWGPSSLPFKHIEAEKPVDLSFEGTQNTINKNIANGNLGVPDKISKKVGVDVLSETS
SSKRWLRSFFTKAGTVEYEGSIWTRFPQKSSFPSSAKVVSFGIFTSNFPVLRFLCKENSS
SSGESCQETIRNLENGSHENVELGTSDVGSNTSYKCTRVFSSNSHQLIGFFLTLMNSASA
STSDGSERRTKNMIVIGRLDIWGIQWVSLVKLQQNVNTCPLNDWKDFHFSDDVLICLNAS
GFVFFYDAISGEHVAHLDILQTCRLSCSANLREPERSSLDDDMQSKSNYQHGDLFGRRTF
KRLLLASYTSHLAVVDENDIVYVIYGDDHLPDKYHAIEKLLPHYQHLGLGMLVGWDVGNS
DISHQRIYISSSNSCNLNSSSKKNEIVSFCDNTGNNILQKIHSWNRYGNGCLSDSVLNGF
SAASKVTDEKVHDSQIQFHLMRKIFLPTDRYSDDDCICFSPFGITWLIRRHNFKESKNSK
IVHFDLHTDSVVQDDRFLNLGSKKFSLKGREELSIGEAIGCTFQGCFYLVTDGGLSVVLP
SVSVSSNLLLIETVGYQQPNIGTGIGCQAKNILGLEEPKMFWSPWKVEILDRILLYEGPE
EADRLCLENGWDLRFSRMRRLQVALDYLKFDEAKQSLEMLVGVNLAEEGVLRLLFAAVYL
MFGKNGNDNEVSAASRLLKLATWFATKMIREYGLLQLKRDAFMFHGLDRPGVLALPSVLP
DKTQNEVGTSMKLREMAHFLEVIRNLQYQLRAKLKKPGQALVDRKESLTIVDPSSLQDEF
QFSTPSVDSLETLNQHELQIPALAFLPNNNEKLALVPNNSISTESYLNSEDPGEATALIR
HGVGSGKILPTENPKEMIARWKIDNLDLKTVVKDALLSGRLPLAVLQLHLHRSSELTSDE
EPHDTFNEVSDIGRDIAYDLFLKGETELAIATLQRLGEDVEICLKQLLFGTVRKTLRVQI
AEEMRRYGYLGSVEWKLLERISLIERLYPSCSFWKTFHDRLKGCMRVTSTLNSPEGVHLR
LLDFFNNLKIECGEIDGVVLGAWATVNENSSDTVPDQDDVHAGYWAAAAVWSKVWDQRTI
DRIVLDQPFVMGVHVSWESQLEYHAYHNDWEEVFKLLDFIPTSMLSNGSLQIALDGFQPA
STIECSRFPDFGNYICSVEELDAVCMDIPDIKIFRSSSVFMCSTWLRMLIEQELVQKLIF
LKEYWEGTAELASLLARSGFITERDKISFEDNSILRSPDLDFSSRNGNFRLDTVQALDKL
LIRYCAQNNLPNLLGLYLDCHKLVFNDESLLSLQEAAGDCHWARWLLLSRFNGHEYDASF
ENTRSIMSHNLIHGGNLHGHEVDEVIHTIDDIAEGGGEMAALATLMYASAPIQNCLTSGS
VNRHNSSTAQCTLENLRPTLQHYPTLWHTLVSGCFGQDTTFGFFQTGAKNALADYLNWRD
NIFFSTGRDTSLLQMLPCWFPKAVRRLVQLYVQGPLGWQSLSGLPTGESLLDRDIDFYIN
ADEQAEINAISWEATIQKHVEEELYHSSLKETGLGLEHHLHRGRALAAFNHLLISRVEKL
KIEGRTNASGQTNVQSDVQTLLAPISEKEECLLSSIMPFAITHFEDNVLVASCAFLLELC
GLSASMLRVDVASLRRISFFYKSIQNKDNSRQLSSKGSAFQAATHDDSIMESLARALADE
CMHGDNSRNSKQRDSLISVYGKQPSRALMLVLQHLEKASLPQLVEGKTCGSWLLTGNGDG
TELRSQQKAASQYWSLVTVFCQIHQLPLSTKYLAVLARDNDWVGFLCEAQIGGYSFDTVF
QVASKEFSDPRLKIHILTVLKSMQSKKKASSQSYLDKKSESPFLEENVYMPVELFRVLAD
CEKQKNPGEALLLKAKDFSWSILAMIASCFPDVSPLSCLTVWLEITAARETKSIKVNDIA
TQMAGNVAAAVEATNSLPDGSRSLSFHYNRWNPKRRRLLDTSCRAPLSEASDSSTRIFSA
EGSTAGEEKKVELSEQINVSSDFNEGPASLAKMVAVLCEQRLFLPLLRAFELFLPSCSFL
PFIRALQAFSQMRLSEASAHLGSFSARIKEEPSHLQTNIGRDGQIGMSWISSTAIKAADA
TLSTCPSPYEKRCLLQLLAAADFGDGGFAAACYRQLYWKINLAEPSLRKYDGLHLGNETL
DDASLLTALEENMQWEQARNWARQLEASGGPWKSIFHQVTETQAESMVDEWKEFLWDVPE
ERVALWGHCQTLFIRYSYPALQAGLFFLKHAEAVEKDLPARELHEMLLLSLQWLSGMIAQ
SNPVYPLHLLREIETRVWLLAVESEAQVKSEGEINLAGSSQNHLPGNISNIIDRTASIIT
KMDNHINSMKNRTVEKYDARDPLHRNQALDSSSSAVAIGSSKTKRRAKGYVPSRRPLVDL
VDKSPEPEDGSNPPNLRNDVQLQDENLKIEISFSKWEERVGPRELERAVLSLLEFGQISA
AKQLQQKLSPGQMPSEFILVDTALKLAAMSTPTSEIPIAILDEELLSVIQSYTPIDQHLI
YPLQVLENLATVFTEGSGRGLCKRIIAVVKAANVLGLSFPEAFGKQPIELLQLLSLKAQE
SFEEAHLLVQTHVMPAASIAQILAESFLKGLLAAHRGGYMDSQKEEGPAPLLWRFSDFLK
WAELCPSEPEIGHALMRLVITGQEIPLACEVELLILSHHFYKSSACLDGVDVLVALAATR
VEAYVSEGDFACLARLITGVGNFHALNFILGILIENGQLDLLLQKYSTAADTNTGTAEAV
RGFRMAVLTSLKHFNPYDLDAFAMVYNHFDMKHETASLLESRAEQASLQWFECYDRDQNE
DLLESMRYFIEAAEVHSSIDAGNKTRRACAQASLVSLQIRIPDSKWLNLSETNARRALVE
QSRFQEALIVAEAYGLNQPTEWALVLWNQMLNPELTEEFVAEFVAVLPLQPSMLSELARF
YRAEVAARGDQSQFSVWLTGGGLPAEWAKYLGRSFRCLLKRTRDLRLRLQLATSATGFAD
VVDACMKALDWVPDTAAPLVLRKGHGGAYLPLM
NT seq
9642 nt
NT seq
+upstream
nt +downstream
nt
atggatcgttctgccggtagtgagggtcctgctatactgaaattacataaatggggtccc
tccgggttgccactcaatctgtcagaatatcgtgaagcttttatatctccgacaagggag
ttactgttattgctttcataccagtgccaagctttgctacttcctctgactacagggggt
tctgtggatactgatgtttctgaaagttgtcatgacaagagttctcaaaatttaggttta
ttagcttctaggtccaatttaaaggaggatattccgtccacttctgggtctgcatcagat
tgtgatgatgttatttccctgaaacatggattctcaaggtctaatggttacccttttctt
tgtgatgtgaactcattggcttgggggatgtgtggggatacctataatcagcacaaagat
ggttcatttagagaacttctttttgtgtctggcaatcaaggtgtgatggtgcatgccttt
tctcatcctgataatagcagtgagcctgcagcaatgttagagggtgagtttagggaaggg
aaatgggttgagtgggggccttcgtccttgccatttaagcatattgaggcagagaagcca
gttgatttgtcttttgaagggactcagaatactatcaataaaaacattgcaaatggaaat
ttaggagttccagacaagataagtaagaaagttggggttgatgtattgtcagaaacttcc
agttcaaagaggtggttgcgatcatttttcactaaagctggaactgttgagtatgagggt
agcatttggacgaggtttcctcagaaatcgtcatttccttcctctgcgaaagttgtttct
ttcggcatttttactagtaatttcccagttctgagattcctttgtaaagagaactcttca
tcaagtggggagagctgccaagagactattagaaatctggaaaatggttcccatgaaaat
gttgagttgggtacatctgatgttggttccaacacttcatataaatgcaccagagtgttc
tctagcaattcacatcagttaattggattctttttaacactaatgaactctgcatctgct
agtactagtgatggaagtgagagaaggactaagaatatgattgtcattggcaggttggat
atttggggaattcagtgggtttctttagtgaagcttcagcaaaatgtgaatacatgtcca
ctgaatgattggaaagacttccacttttctgatgatgttcttatttgcctcaatgcttct
ggcttcgtgttcttttatgatgcaatttctggtgagcatgttgcacatcttgatatttta
cagacttgcaggttaagctgttctgcaaatttgcgtgaaccagaaaggtcatctttagat
gatgatatgcaaagcaagtcaaattatcagcatggtgatttatttggtagaagaacattt
aagaggctacttctcgcgtcatatacatctcatttggctgtggttgatgaaaatgatata
gtctatgtgatttatggtgatgaccatctaccggacaagtatcatgcgattgaaaaattg
cttccacattatcaacatttaggacttgggatgttagttggttgggatgtagggaattct
gatattagccatcaaaggatatatattagttcttcaaattcttgtaatttaaatagctct
tccaaaaagaatgaaattgtttctttttgtgataatactggaaacaatattcttcagaaa
atccatagctggaaccgttacggaaatgggtgcctttctgattcagttttgaatggcttt
tctgctgcttcaaaagtaacagatgagaaagttcatgattcacaaatacagttccacctt
atgcgaaagatttttcttcccacagatagatatagtgatgatgactgtatttgtttttct
cctttcgggattacttggctcattagaaggcataatttcaaggagagcaagaattctaaa
attgttcattttgatttgcatacagactcagtagtccaagatgatagattcttgaatttg
ggaagcaaaaagttttctctcaaagggagagaagaactttctattggagaagctattggt
tgtactttccagggttgtttttatttggtgactgatggtggtctctcggtggttctccct
tctgtttcagtttcatcaaatctccttctcattgaaaccgttggttatcagcaaccaaat
attggtactggcattggatgtcaagcaaaaaatattctgggactggaagagccaaaaatg
ttctggtcaccttggaaagttgaaattttggatagaatccttctgtacgaaggtcctgaa
gaggcagatcgtttatgcttggaaaatggatgggatctgaggttttcacggatgcgtcgg
ctacaagttgcattggactacttgaaatttgatgaagcaaagcaatctttggagatgctt
gtgggtgtcaacctggcagaagaaggggttttgagattactttttgctgcagtttatctt
atgtttgggaaaaatgggaatgataatgaggtttctgctgcatcaaggctactaaaatta
gctacctggtttgctaccaaaatgatacgtgaatatggattactccagcttaaaagggat
gcattcatgtttcatggcttagataggccaggtgtccttgctcttccttcagtattacct
gacaaaacacaaaatgaagtaggaacttccatgaaacttcgggagatggctcattttttg
gaggttattcgtaatctgcaatatcaacttagagcaaagcttaaaaagccaggacaagca
ttggtggaccggaaggaatcattaactatcgtagatccaagttccttgcaggatgaattt
cagttttcaacaccttcagtggattcactggagacactgaatcaacatgagcttcaaatt
cctgcattagcattcctacccaacaataatgagaaacttgctttggtgcccaacaattcc
ataagcactgagtcttatttgaactcggaggatccaggtgaagcaactgccctaattcga
catggagtgggctcagggaaaattcttccaactgaaaatccaaaagagatgattgcacgt
tggaaaatagataatctggatttgaaaactgtggtaaaagatgcgttactctctggacgc
ctccctttagctgttctccaattgcatcttcatcgttcaagtgaactcacctctgatgaa
gagcctcatgataccttcaatgaagttagtgacattggaagagatattgcttatgaccta
tttttgaagggtgaaactgaacttgctatagctacattacaaaggctcggagaggatgtt
gaaatctgccttaagcagttgttatttggcacagtaaggaaaactctacgtgtacaaatt
gctgaggagatgaggagatatggttacctgggatcagttgagtggaaattattggagaga
atatcacttattgagcgactttatcctagctgtagtttctggaaaacgtttcatgaccgc
ctgaaagggtgcatgcgtgtcacatcaactttaaactcaccagaaggggttcatttgcgc
cttttggactttttcaacaatttaaaaattgaatgcggtgagattgatggagtcgtttta
ggcgcatgggcaactgttaatgaaaattcatctgacactgtgcctgatcaagatgatgtt
catgctggatactgggctgctgctgctgtgtggtccaaagtctgggatcagagaaccatt
gatcgtatagtattggatcagccttttgtaatgggtgttcatgtatcatgggagtcacaa
ttggaataccatgcatatcataatgactgggaggaagtgttcaaactcttggattttatt
cctacatccatgttatcaaatggaagcctccaaatagctttggatggtttccagcctgcc
tcaaccattgaatgcagccgatttcctgactttggcaattatatttgctctgtcgaagaa
ctggatgctgtatgcatggatattccagatattaagatttttaggtcgtcttccgttttt
atgtgttctacgtggttaaggatgctgatagaacaggagcttgtgcagaaacttatattt
ttgaaagaatattgggagggcactgcagagctagcatctcttcttgcacgatcaggcttc
attactgagagagataagatttcatttgaagataattccatattgagatccccagatcta
gatttctcaagcaggaatggaaattttcgcttagatactgtgcaagctcttgataaatta
cttattcgttattgcgcacaaaataacttgccaaatcttctgggcctttaccttgattgt
cacaagttggttttcaatgacgagtcacttctttcattacaggaagctgcaggagattgt
cattgggcaagatggttgctcttatcaaggtttaatggccatgaatatgatgcatctttt
gaaaatactcgttcaataatgtctcataatttaattcatggtggcaacctccatggtcat
gaagtagatgaagtaattcatactatcgatgatattgcggaaggaggtggagagatggca
gcattagcaactctaatgtatgcttcagctccaatacaaaattgcttaactagtgggagt
gttaacaggcataacagctccacagcgcagtgcacattagaaaatctgagacctacattg
cagcactatcctacattgtggcacacacttgtctctggatgttttggacaagatacaact
tttggtttcttccagactggagctaaaaatgctttagcagattacctgaattggcgtgac
aacatcttcttctctactggacgcgatacttcgttactacagatgctaccttgttggttc
cctaaggctgtgcggcggttggtccagctttatgtgcagggtcctcttggatggcaatcg
ctttcaggtttgcctactggagaatctttgttggatagagacatcgatttttacataaat
gctgatgaacaagctgagattaatgctatctcctgggaagcaactatacaaaagcacgtt
gaagaggaactttatcactcttcactcaaggaaacaggacttggtcttgaacatcatttg
catcgtggccgtgcactggcagcttttaaccatcttcttatttcaagagttgaaaagtta
aaaatagaagggagaaccaatgcttctggacaaacaaatgttcaatcagatgtccaaaca
cttcttgcacctatatctgagaaggaagagtgtcttctttcatctatcatgccctttgct
attacccattttgaagacaacgtgttggtggcatcatgtgcttttctcttagagctttgt
ggcttatcagccagcatgctgcgagtagatgtagcttcattgagacggatatctttcttt
tacaaatccattcaaaataaggataattctaggcaactttcctccaagggttcggctttc
caagctgcaacacatgacgatagtattatggagtctctagctcgagcactggctgatgaa
tgtatgcatggggataactctaggaattctaagcaaagggattctctaatttcagtttat
ggtaaacagccttctcgagctcttatgcttgttctacagcatttagagaaggctagtctt
ccacagttagtggagggaaaaacctgtggatcttggctcttaactggtaatggtgacgga
actgaattgagatctcaacaaaaagctgctagtcagtactggagtttagtaaccgtcttc
tgtcagatacatcagctgcccttgagtacaaaatatcttgcagtattagcaagagacaat
gattgggttggatttttgtgtgaagctcagattggaggatactcatttgacacagtgttc
caagttgcatcaaaggaattcagcgatcctcgtcttaaaattcatatactaacagttttg
aaaagcatgcagtcaaagaaaaaggctagctcccaatcatacctggataagaagagtgaa
agtccctttctagaggaaaatgtatatatgcccgttgagctcttcagagttttagcagat
tgtgagaagcagaaaaaccctggcgaggctttattgctaaaagcaaaagatttctcgtgg
tctattttggccatgattgcatcatgttttccagacgtgtctccactgtcatgcttaaca
gtttggttggaaataactgcagccagggaaactaaatctatcaaggttaatgacatagct
acccagatggcaggtaatgttgcagcagcagtggaagctaccaattccttgccagatggc
agcagatcactgtcatttcattacaataggtggaatccaaaacgaaggcggcttttggac
acttcatgcagggctcccttgtctgaggcatctgatagttcaacaagaatattttctgct
gagggcagtactgctggggaagaaaaaaaggttgaactcagtgagcagattaatgtttca
agtgattttaacgaaggtccagcttctctagccaagatggttgcagtgctttgtgaacag
cgcttgtttctgcctttactaagagcatttgaattgttcctcccttcatgttccttcctg
ccatttatccgggctcttcaggcattttcgcaaatgcgtctgtctgaagcttcagcacat
cttggttctttttctgccagaattaaggaagagccaagtcatttacagactaatattgga
agagatgggcagattggaatgtcatggattagttccactgcaataaaagctgctgatgct
accctttcaacttgtccatctccttatgaaaaaaggtgcttactgcagcttcttgctgct
gctgactttggagatggaggctttgcagctgcttgctatcgacaactttattggaaaata
aatctagcagagccttctttgcgtaaatatgatggactgcaccttgggaatgaaactcta
gatgatgcttccctcctaacagcgctagaagagaacatgcagtgggagcaagcacgcaac
tgggcaaggcagctggaggcgagtggcggaccttggaaatctatttttcaccaagttact
gaaactcaggctgaatccatggtagacgaatggaaagaattcctttgggatgtccctgaa
gagagagttgctttatggggtcactgccagactttattcattagatattcctatcctgct
ttacaggcagggttgtttttccttaagcatgcagaagcagtggagaaagatcttccagct
agagagcttcatgagatgttgttgctttctcttcaatggttaagtgggatgatagcccag
tccaacccagtttatcctttacatcttctgcgagaaattgagactagagtatggctttta
gccgtagaatctgaagctcaagtgaaaagtgaaggagaaatcaatttagcgggttctagc
cagaatcatctcccagggaatatttccaacattatcgatcgaactgctagcataataaca
aagatggacaatcatattaattcaatgaagaatagaactgtggagaaatatgatgcaagg
gatccactccacagaaaccaagcattagactccagctcttctgctgtagcaattgggagt
tcaaagacaaaacgaagggccaaaggctatgtgccatcaaggaggccattggtggaccta
gtagataaaagccctgagccagaagatggttccaatcctcccaatcttagaaatgatgtc
cagttgcaagatgaaaacttaaaaattgaaatatctttttctaagtgggaggagagggtt
gggcccagagagcttgaaagggctgttctgtccttactagagtttggacaaatatcggct
gccaagcaactccaacagaagctgtcacctggccagatgccttctgaattcatactcgtg
gatactgctctgaaacttgctgcaatgtccactcctaccagtgaaataccaatagcaata
cttgatgaggaacttctctctgttattcagtcatatacaccaattgatcagcatctcatc
tacccactgcaggtcttggagaatttagcaactgttttcaccgaaggtagtggacgtggg
ttatgcaagagaataattgcagtagtcaaagctgcaaacgtcttgggtctttcatttcca
gaggcatttggcaaacagccaattgaattgctacagctactttctcttaaagctcaggag
tcttttgaggaagcacatctccttgtgcagactcatgttatgccagctgctagtatcgct
caaattcttgcagagtcctttctaaagggtttattggctgctcatcgtgggggatatatg
gattctcagaaagaggaagggccggctcctcttttgtggagattttcagatttcttgaag
tgggctgaactgtgtccttctgaacctgaaattggccatgcattaatgcgtttagtgatt
accggacaagaaataccacttgcctgtgaggttgagcttcttattctttcacaccatttc
tacaaatcatcagcatgccttgatggggttgatgttcttgtagcccttgctgcaaccagg
gttgaagcttatgtttccgagggtgattttgcatgtttggctcgcttgataactggagtc
ggaaacttccatgcccttaattttattcttggcattctcatagaaaatggtcaattggat
ctacttcttcagaagtattccactgctgcagatacaaatactggcactgctgaggctgtc
agaggatttcgaatggctgttctaacgtctttgaagcattttaatccttatgaccttgat
gcatttgctatggtttataatcattttgatatgaagcatgaaacagcttctctgctggag
tcacgagcagagcaagcttccctgcagtggtttgaatgctacgacagagaccagaatgaa
gatctcctggaatcgatgcgctatttcattgaagctgctgaagttcactcttcaattgat
gccggcaacaaaacacgcagggcttgtgcccaggcttctcttgtctcgcttcaaatacgc
attccggattctaaatggctcaacctatctgaaaccaatgctaggcgagctctagttgag
caatctcgattccaagaggctcttattgttgcagaagcctatggtcttaatcagccgaca
gaatgggccctagtcctttggaatcagatgctcaatccagaactcacagaagagtttgtg
gctgaatttgtggctgtgcttccacttcagccatctatgcttagcgaactggcaagattc
tacagggccgaggtagctgccagaggtgatcaatcccaattctcggtttggctcactgga
ggagggttaccagcagaatgggccaaataccttgggagatcatttagatgcttgctgaag
aggactagggatctgcggctacgattgcaactggctacttcagctactgggtttgctgat
gtggtggatgcctgcatgaaggccttggattgggttcctgatactgcagcaccacttgtc
ttgaggaaagggcatggtggggcttatctcccactaatgtga
DBGET
integrated database retrieval system
