Gossypium hirsutum (upland cotton): 107925577
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Entry
107925577 CDS
T04793
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03410
Base excision repair
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107925577
03410 Base excision repair
107925577
03420 Nucleotide excision repair
107925577
03430 Mismatch repair
107925577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
107925577
03036 Chromosome and associated proteins [BR:
ghi03036
]
107925577
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107925577
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107925577
DNA Replication Termination Factors
ELG1-RFC complex
107925577
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
107925577
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107925577
Check point factors
HRAD17(Rad24)-RFC complex
107925577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCF1-5-like_lid
DNA_pol3_delta2
RFC_C
RuvB_N
NB-ARC
DUF896
AAA_30
Motif
Other DBs
NCBI-GeneID:
107925577
NCBI-ProteinID:
XP_040942350
LinkDB
All DBs
Position
D01:61388011..61396764
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AA seq
652 aa
AA seq
DB search
MPSPATIPRRSSSDPDLTVTTSKSKTLIVTPPSSRSSASVSRGKKSSYWISWSNISKLGD
FIDQRKKESDLTEESLHEHNKLHGIYSHKFRLNNFIGDDEVDEKYNKCSPYYKGLTDSTL
RINREKNVSGADSPGRESQTTTVFSTSSSSLSILFGKVQELGSSCFTCTRTGDYYKDPDV
LKPVKATNPSLPVPCSNTTSMKDIKPEIKEAEDNPPDVQLVFKEKPLRERVREPSAAPPT
VTKTVVERKEAEVNQKFILADKYRPKALKDFICNRSEALRVQDLVKSGEFSHIIFEGPAG
VGKRTMMTAVIREIFGSDRVQTRDECKPYYLKGESVRRMDVNIRESSKHVEVNLSDLRGY
EKHVIVELMKETQPNKPFSYDPQNYKAIVLCEADKLSTDALLYIRWLLERYKAGNKVFFC
CSDISKLQPIRSLCTVIKLLPPSKQEIVEVVEFIAKQEGIVLPPKFGERIANSSKNNLRQ
AIRSFEACWQSSYPFKEDQIILTGWEEDIANIAKNMVEERSPKQLYIIRGKLQILIEHDV
SPDFIFMSLVGEVKKHLDENLHPQVDVLYDEYNRDDENMIESEDEMGTKVIDPVKKNSRI
FSRIEEFIARFMSWYNNQSKMANAAATFFWPPVKGLQYSSHILLAADEGTSP
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgccgagtccagctacaatcccccgacgttcctcatcggatccggatctcaccgtcaca
acgtccaaatccaagaccttaatcgttacacctccgtctagtcgttcctcggcgtctgtt
agccgtggtaagaaatcatcttactggattagttggagcaacatcagtaaactaggcgac
ttcatcgaccaacgaaaaaaagagtccgatttaaccgaagagagtctccacgaacataac
aagttgcatggaatatattctcataagtttcgtcttaataatttcattggtgatgacgaa
gtcgatgaaaagtacaataagtgcagcccttattacaaaggcctcactgattcgacactt
aggattaaccgtgaaaagaacgtgtccggagccgatagtcctggtcgagaaagccaaacg
acgactgttttcagtacgagttcgagctctctttcgattttgttcggtaaagttcaagaa
ctcggttctagttgttttacttgtacaagaactggtgattattacaaggatcctgatgtt
ctcaaacctgttaaggcaactaatccttcattaccagtaccatgttctaatacaacttca
atgaaggatataaaaccggagataaaggaggctgaggacaatcctcctgatgttcaatta
gtttttaaggagaagccattgagggagagagtacgggaaccatcggctgcaccaccgacg
gtaaccaaaaccgttgtcgagagaaaagaagccgaggtgaatcaaaagttcatattggcg
gataagtaccgacccaaagctttaaaagatttcatctgcaatcgaagtgaagcacttcgg
gtgcaggatctggtgaaaagcggagaatttagtcacattatatttgaaggacctgccggt
gttgggaaaagaactatgatgacagctgtaattcgtgaaattttcggatcggatcgagtt
cagaccagggacgagtgcaagccatattatttgaagggggaatcagtaagaagaatggat
gtaaatataagggaatcatccaaacatgtagaagtgaatctttcggatctaagaggatac
gagaagcatgtgattgtggaactaatgaaggaaacacaacctaataaacctttctcatac
gaccctcaaaactataaagcaattgttttatgtgaagcagacaagctaagtactgatgca
ttactgtacattcgatggctgttagaaaggtataaagcgggaaataaagttttcttttgc
tgctccgatatctctaagcttcagccgattagatcactttgcactgtcattaagctactt
ccaccttcaaaacaagagattgttgaagtagtggaatttatagcaaagcaagaaggtata
gttttgccacctaagtttggtgaaaggatagctaatagttcaaagaataatctgcgtcaa
gccattcgttcattcgaagcctgttggcaatcaagttatcctttcaaggaagaccagata
atattaacgggatgggaagaagacattgcaaatatagccaagaacatggtggaggagcga
agtccaaaacagctatatatcattcgaggaaagcttcaaattctcattgagcatgatgta
tctcctgactttatattcatgtcattggttggagaagtgaaaaagcacttggatgagaac
ttgcatcctcaagtagatgttttatatgatgaatacaatagggatgatgaaaacatgatt
gaaagtgaagatgaaatggggacgaaagttattgatccggtcaaaaagaacagtcggatt
ttctccagaatcgaagagtttatagccagattcatgagctggtacaataatcaatcaaag
atggcaaatgcagcagccacattcttctggccgccggtgaagggacttcagtacagcagc
cacattcttctggccgccgatgaagggacttcaccctga
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