Gossypium hirsutum (upland cotton): 107925908
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Entry
107925908 CDS
T04793
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107925908
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107925908
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
UTP6_C
NRDE-2
TPR_12
TPR_10
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
107925908
NCBI-ProteinID:
XP_016712146
UniProt:
A0A1U8LC18
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Position
D07:54908793..54917798
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AA seq
811 aa
AA seq
DB search
MGDSEAVVTDSSASMDYTSAVYNSTGSGACPPEATGDPNASIAPVDGTYAASGVYLNSAG
QEGQISITNESKPTGGSTDGNAINAGNTAVDATKTAGYSISLNGNIVNEARNTTTVENGN
VLDNVGRASNAPEFVGSVPAMSGEEDRLWSIVRANSLDFNAWTALIEETEKVAEDNILKI
RKVYDAFLAEFPLCYGYWKKYADHEARIGSMDKVVEVYERAVQGVTYSVDIWVLYCSFAI
ETYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMHQEWSRLAVIYTRILENPNHQ
LDRYFNSFKELAGSRPLSELTTAEEAAAYVSGIASEADGEVLEGEVRPDAAEQTPKPVSA
GSTEAVELEKCVAIREELYKKAKEFDSKILGFETAIRRPYFHVRPLNVSELENWHNYLDF
IEREGDVNKVVKLYERCLIACANYPEYWIRYVLCMEASGRMDLADNALVRATRVFVKRQP
EIHLFDARFKEQHGDIPGARAAYQLVHSEISPGFLEAIIKHANMESRLGKLDDAFSLYEQ
AIAIEKGKEHSQTLPMLYAQYSRFSFLVSGNAEKAREILTRALDHVQLSKPFLEALIHFE
TILPPLRQIDYLESLVDKFLAPSLDGSTADKEDLSSIFLEFLGLFGDVQSIKRAEDRHAK
LFLPRRPISELRKRRAEDFSSSDKTKLAKFYSGAPSPGQSLLGIYPNAQNQWQAGYGVQP
QTWPPTTQPPAQAQPWTPGYGQQGAYGACSSYGSNYATQQVPTSVPQIAGYGAYLATYPV
QSFPQPTATTTLTPVQQPAATVPQTYYGSYY
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgaagcagtagttactgactcatctgcaagtatggattatacatcagca
gtctataattctactggttctggtgcttgtccccctgaggctactggagatccaaatgct
tctattgcaccagtagatggaacttatgctgcttctggtgtttacctgaattcagctggt
caagagggtcaaatcagcataacgaatgaaagtaagccaactggtggatcaaccgatggg
aatgctatcaatgctggaaacacagcagtagatgcaactaaaactgctggttatagtatt
tcattaaatggcaatattgtaaatgaagctcgaaatactacaacggttgagaatgggaat
gttttagataatgttggcagagcttctaacgcaccagagtttgtgggttctgtgccagcc
atgtctggtgaagaggatcgtttgtggagtatagtgagagctaattctttggattttaat
gcttggactgcattgattgaggagacagagaaggttgcagaggacaatatattgaagatt
cgaaaagtttatgatgctttcttggctgagtttcctttgtgttatggttactggaaaaag
tatgcggatcacgaagcacgcataggctccatggacaaagttgtggaggtttatgaaaga
gcagttcaaggagtgacttattctgtggacatctgggtgctatattgttcttttgctata
gaaacatatggagatccggaaactatccgcaggctttttgaacgaggattagcgtatgtt
ggaactgattatctttccttccctctttgggataagtacattgaatacgaatacatgcac
caggaatggagtcgccttgctgttatatatacacgaatattagagaaccccaatcatcag
ctagataggtatttcaacagttttaaagagctagcaggaagtagacctttgtcggaatta
acaactgccgaggaagctgctgcatatgtatcaggtatagcttcagaggctgatggggaa
gtacttgaaggagaggttcgtcctgatgctgcagaacaaactcctaagcctgtaagtgct
ggctcaacagaagcagttgagttggagaagtgtgttgctattagagaagagctgtataag
aaggctaaagagttcgactctaagattcttggttttgaaacagctatcaggaggccttac
tttcatgtgcgtccccttaatgtttctgagcttgaaaattggcataactacctggacttc
atagaaagagagggtgacgtcaataaggtggtcaaattatatgaaaggtgcctaatagcc
tgtgccaattatcctgaatactggatacgatatgttttatgtatggaagccagcggaaga
atggatcttgctgataatgcacttgtgcgtgctacgcgagtctttgtcaagaggcaaccg
gagatccatctttttgatgctcgattcaaggaacagcatggggacatacctggtgctcga
gctgcatatcaacttgttcacagtgaaatttcacctggttttcttgaggcaattattaag
catgcaaatatggaaagccgtctggggaaacttgatgatgccttctctttatatgagcaa
gccattgctattgaaaaaggaaaagagcattctcaaacgttaccaatgttgtatgcacag
tactctagattttcattcttggtttctggaaatgcagagaaggctagggaaattctgact
agggcacttgaccatgtccaactatctaaaccattccttgaggccttaatacattttgaa
acaattttgccacctctaagacagattgattacttagaatcattggttgacaagttcttg
gccccgagtttggatggcagtactgcagacaaggaagatctatctagcatatttttggag
ttcttgggtctttttggagacgtgcagtctattaaaagggctgaagatcggcatgctaag
ctctttctaccccgtaggcccatttctgaattaagaaaacgtcgagctgaagatttttca
tcttcagataagacaaagctggcaaaattctactcaggtgccccttcacctggccagtct
ttgcttggtatctatccaaatgcacaaaaccagtggcaagctggttatggtgtgcaacct
caaacttggccacccactacacagccaccggcacaggcacaaccgtggacccctggctac
ggtcaacagggagcgtatggtgcttgtagtagttatggtagcaattatgctactcaacaa
gtacccacatcagttccacaaattgccggttatggtgcttatctagctacataccctgtt
cagagctttcctcagccaactgccaccacgacactaaccccagttcagcaacctgctgca
actgttcctcagacttactacggttcttactattga
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