Gossypium hirsutum (upland cotton): 107925947
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Entry
107925947 CDS
T04793
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107925947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107925947
04121 Ubiquitin system [BR:
ghi04121
]
107925947
03036 Chromosome and associated proteins [BR:
ghi03036
]
107925947
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107925947
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107925947
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
107925947
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107925947
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107925947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-HC5HC2H_2
zf-RING_2
Prok-RING_4
RTT107_BRCT_5
PHD_NSD
zf-RING_6
PTCB-BRCT
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
107925947
NCBI-ProteinID:
XP_016712200
UniProt:
A0A1U8LC56
LinkDB
All DBs
Position
D07:complement(55004935..55009403)
Genome browser
AA seq
678 aa
AA seq
DB search
MSFSTKQNSSRAMNPWVLHLQKLGLELKCPLCLNLFKRPLLLPCDHLFCDSCVARTEFGL
ECPICKVQCANRDLRPLTFMENIVGIYRSLDSAFSANLSHSIEDGVGKTEKFDKCSMQRR
ATDVGYETPNKDGVDLLRSVSHKQIGASQESRNRQIIMNQADQASLSPPSYGDTKVSDND
SEHSPANFPAKGAGKRNFDDMIGLKQNDSVLGIDGHLCDSKRQKRLNYGTLDGGAKTMDD
CQSDLQAQNIVTSDCQLRSQNGAPLAGTGLLVTSENMNVNRAICEFCQSSKISEATGMML
HYINGKPVTGDASFGSNVIHVHSSCIEWAPQVYFVGDNVKNLKPELARGAKLKCSRCGLK
GAALGCYVKSCRRSYHFPCAKEIPKCRWDYEDFLVLCPAHSSVKFPSEKSRKAHSAAKFP
NEKPGNCLSADDRVPTESGQLKSNTFWGQPENKKDWVFCGSALSPEEKFLLVKFAKMIGV
TVSKFWRPDVTHVIASTDENGACTRTLKVLMAISDGKWVLKLNWIKECVKAMYPLNEEPY
EVSLDNHGCCDGPKTGRLRVLDNAPKLFDGFSFYFVGDFVSGYKEDLQNLVVTAGGIVLR
RMEELVAHKNGEQRAQTKMVVVYNLDAPQGSELGEEVTIIWQRVSEAQDIATKLGGQVIG
HTWLLESIAACKLQPFVN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttcgactaagcagaatagtagcagagcaatgaatccttgggttcttcatctc
caaaaactgggtctcgagcttaagtgtcctctctgcttgaacttgtttaagcggccattg
ttgctcccatgtgatcatttgttctgcgattcgtgcgtagcaagaactgagtttggttta
gagtgccctatttgcaaagttcaatgcgcaaatcgagatctaaggcctttgaccttcatg
gagaatatagtaggaatctatagaagtttggattctgcattttctgccaacctttctcat
tccattgaagatggggttggcaaaactgaaaaatttgataagtgcagcatgcaaaggcgt
gctacagatgtaggttacgagactcctaacaaagatggagttgatttgttacgatcagtt
tcccataaacaaataggggcatctcaagagtctaggaataggcagatcatcatgaaccaa
gctgatcaagcatccctcagcccgccttcctatggtgatacaaaggtctctgacaatgat
agcgagcatagtcctgcaaactttccagccaagggagcggggaagagaaattttgatgat
atgataggtctgaagcagaatgattctgttttagggattgatggtcatttatgtgattcc
aagagacaaaagaggttgaactatgggacattagatgggggtgcaaaaaccatggatgat
tgtcaatcagatctgcaagctcaaaacattgtgacttctgattgtcaattaagatctcaa
aatggagcacctcttgctggtactggtttgcttgtgacatcagagaacatgaatgtaaat
agggctatttgtgaattttgccagtcctctaaaatctctgaggccactggaatgatgtta
cattatatcaatggaaaaccggtaacaggagatgcttcatttggctcaaatgttatacat
gttcacagctcgtgtattgaatgggcacctcaagtgtattttgttggtgacaatgttaag
aaccttaaaccagaactggcaaggggtgcaaagctgaagtgcagcagatgtggactgaag
ggtgctgcacttggctgttatgtgaagtcttgccgcagaagctatcatttcccttgtgca
aaagagattccaaaatgtcgatgggactatgaggactttcttgtgctttgtcctgcccat
tcttcagtcaagtttccaagtgagaagtctagaaaggcccattctgcagccaagttccca
aatgagaagcctggaaactgtctatctgctgatgatagagtgccaactgaaagtggccag
ctgaaatccaacactttctggggccagccagagaataagaaagattgggttttctgtgga
tctgctttgtctcctgaggagaagtttcttctggtcaagtttgcaaaaatgattggtgta
actgtatccaagttttggaggccggatgtcactcatgtgattgcctctacagatgagaat
ggtgcatgcactaggacacttaaagttctcatggccatttcagacgggaagtgggttctt
aaattaaattggataaaggaatgtgtgaaagcaatgtatcctttgaatgaagaaccttat
gaagttagtcttgacaaccatgggtgttgtgatggtcctaaaactggcagactcagggta
ttggataatgcaccaaagctctttgatggctttagcttttattttgtgggtgactttgtg
tctggttacaaggaagatcttcaaaatctagttgtcaccgcagggggtattgttttgaga
agaatggaggaactagtggcacacaaaaatggtgaacagagagctcaaacaaagatggtt
gttgtgtataacctggatgcacctcaaggatctgagttaggagaagaagtaacaattatt
tggcagagggttagtgaagcacaggatatagccacaaaattaggtggacaagtcattggt
cacacatggcttttagaatcaattgcagcatgtaagttgcagccttttgtcaactaa
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