Gossypium hirsutum (upland cotton): 107926053
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Entry
107926053 CDS
T04793
Name
(RefSeq) THO complex subunit 4A-like isoform X1
KO
K12881
THO complex subunit 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107926053
09122 Translation
03013 Nucleocytoplasmic transport
107926053
03015 mRNA surveillance pathway
107926053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107926053
03041 Spliceosome [BR:
ghi03041
]
107926053
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107926053
TREX complex
107926053
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107926053
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107926053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
107926053
NCBI-ProteinID:
XP_016712313
UniProt:
A0A1U8LG06
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All DBs
Position
D04:complement(11569777..11573419)
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AA seq
235 aa
AA seq
DB search
MSGSLDMSLDDIIRNKSRSEGHSRDSRRKPRAPAPGPDRRGPIRDQPRINPYPVRPMQLE
VPAWQGQLVSSGALDVEAKLYISNLDYGVSNEDIKVLFSEVGDLKRYSINYDKSGRSKGT
AEVVFFKQADALAAIKRYNNVQLDGKPMTIELVGANVVMSASVPPTKSGILRAPNMASRR
DLEKIGVGRGWVRRFGRGRGHEHEHERDGPIGKKLTAEDLDADLDKYHLEATRIK
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgtccggttcactggacatgtctctcgacgacatcatccgaaataaaagcagatccgaa
gggcattctcgtgattcccgacgcaagccacgtgcccccgccccgggacctgatcgtcgt
ggccccatccgcgaccagccaagaatcaacccgtacccagtcagaccaatgcaattggag
gtgcccgcatggcagggacagttggtttcgagtggagcactggatgtggaggcgaagcta
tatatatcgaacttggattacggtgtttctaatgaggatattaaggtgcttttctctgag
gttggtgacttgaagaggtactcaattaattacgataagagtggaagatcaaagggaact
gcagaagttgtctttttcaaacaggcagatgctttggcagctatcaagcgatacaacaat
gttcaacttgatggaaaaccaatgacaattgaacttgtgggagctaatgtggttatgtct
gcgtccgtccctccgaccaaaagtggcattctgagagcaccaaatatggcctctagaagg
gatctagaaaagattggtgttggaaggggatgggttcgcagatttggtcgaggacgtgga
catgaacatgaacatgaacgagatggaccaattggtaagaaattaactgcagaagatctt
gatgctgatttggacaagtaccatttagaagctacaagaattaaatga
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