Gossypium hirsutum (upland cotton): 107926071
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Entry
107926071 CDS
T04793
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107926071
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107926071
03041 Spliceosome [BR:
ghi03041
]
107926071
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107926071
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107926071
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107926071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
PHM7_cyt
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
107926071
NCBI-ProteinID:
XP_016712348
UniProt:
A0A1U8LGQ8
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All DBs
Position
D04:10161195..10167737
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AA seq
940 aa
AA seq
DB search
MELKVSSPKLGGLSPPGCVNDPEEKEVSDEDDDDRNHKHRRRETRSQSLETDSMDPAFTK
SYRKRNKFFENGQPFRENESQAGETWKSNNSLPLDKDLTSKFDRRRPGLASLPRGHVDVN
QRVRSNQPFSGDSGPGRGRGRDNSSWNQRDSRFNSIDIASQMVHPGSVAPSLFAGRGLPN
VSNAQSPSWGAFGMMPGIPNGGLDTLHPIGLPGVLRPPMNSSLNIGIPRQRCRDFEERGF
CLRGDMCPMEHGVNRIVIEDVQSLSQFNLPVTVPSAQLLATPAAPRPLPSSIPPTTLMSS
KGIHSKSSKSGMTDDALGLNGAYTGSTSASVADLYDPDQPLWNNNGPEASTAVSGLHSPK
IDEAEPLLSGDISDRHHGRLHDNADNELASRSIGSQGTSLSVWGRIGSPGSRTDTKEKID
LAQSAYPENETKEDQEAFPSSQGTSCQVKRISTEDDGSKFMDTSFKSQTDSMHNSRKPTQ
KALRTLFVNGIPLKSNKREALLSHFRKFGEVIDIYIPKNSERAFVQFSRREEAEAALKAP
DAVMGNRFIKLWWANRDSVPDDGINSGSSVTVTSRGPTVFVIPAQAVVNRGGKDNLQPIA
QKSNAVHGAAVPSVNSPKPSGVNGPKVQLPLQKKLETLEQMKEELRKKQEMLEQKRNDFR
RQLDKLQKQSSGVKGDLPTEQAAKKQKVGIAADPAKASIPSLSEPGAPTTIPCTVGMTDK
NKSTENVGSHGPTSNATMSLQESKSSKQQSRPSAPTGYPFLMNKYKLDNRPTAFRVIPPL
PSGFADVDVLKEHFLQYGDLSAVEIEDVENDNDMGSEAMNNCSIVITYGTRWSAERAYVN
GKCWQGNNLQFTWLTSSNSSNDPSSKETSSSTPKGTLEADVQTEGELEFSVSPEVIASGD
KESKNSEGESFVENMALPEVSEHSSSPSSCMKESPKGDAC
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtttcatctcctaagcttggtggtctttctcctcctggttgtgttaac
gatcctgaggaaaaggaagtcagtgatgaggatgatgatgatcgcaaccataagcaccgt
aggcgagagacacgttctcaatcattagagacagattctatggatccggcttttacaaag
tcatacagaaaacgcaataaattttttgaaaatgggcaacctttcagagaaaatgaatct
caagcaggtgaaacctggaaaagtaataacagtttgcctctagacaaagacttgacatcg
aagtttgatagaagacgccctggattagcttcactaccccgaggacatgtggatgtgaac
cagagagttaggtcaaaccaaccatttagtggagattctggtcctggtaggggtagagga
agggataactcttcttggaatcaacgtgattctaggttcaattcaattgatattgcttct
caaatggttcatcctggatctgttgctccaagtctctttgcaggaaggggattgcctaat
gtttcaaatgcgcaaagtccatcatggggtgcctttgggatgatgcctggaataccaaat
ggtggcctagatacactccatcctattggtttaccaggggtgctgaggccacctatgaat
tcttcattgaatattggcattcctcgccaacgttgcagagactttgaggagcgtggattt
tgtctaagaggagacatgtgcccaatggagcatggtgtcaatcgtattgttattgaagat
gttcagagtctgtcacagtttaaccttcctgttacagttccaagtgcacaactattggca
acccctgctgcacctagacctctaccttcaagtattcctccaaccactttgatgagcagc
aagggtatacatagcaaaagtagcaagtctggaatgactgatgatgccttgggtttgaat
ggtgcatacactggctctactagtgcaagtgttgctgatctatatgatcctgatcaaccc
ttatggaataacaatggcccagaagcatcgactgcagtctcaggactacattcacccaag
attgatgaagcagaacccttgctaagtggtgatatctctgatcgccatcacggaaggtta
catgataacgctgataatgaattggcaagtagaagcattgggtcacagggcacaagtttg
tctgtttggggtagaattggtagcccaggaagtagaacagacacaaaagagaaaattgat
ctcgcacagtcggcctatcctgagaatgaaaccaaagaagaccaagaagcgtttcccagc
tctcaaggcacttcctgtcaggtaaagcggatcagcactgaggatgatggctccaaattt
atggatacatcattcaaatcacagactgatagtatgcataatagccgaaaaccaactcag
aaggcacttcgtacactgtttgtcaatgggattcccctgaaaagtaacaaaagagaggct
cttctttctcattttcgtaagtttggagaggttattgacatttatattccgaaaaatagt
gaacgggcctttgtccagttttcaaggagggaagaggctgaagctgctctgaaggctcct
gatgctgttatgggtaatcgctttattaagctctggtgggctaatcgggatagtgtacct
gatgatggcataaacagtggaagcagtgtaacagtaacttcacgcggtccaacggttttt
gttattccagcacaggctgttgttaatagaggagggaaggataaccttcaacctattgct
cagaagagcaatgctgtccatggtgctgctgtaccttctgtgaattcccctaagccatct
ggtgttaatggtcccaaggttcaacttccattgcagaaaaagttagaaactctagagcag
atgaaagaggaactacgcaagaagcaggaaatgctggagcagaagcggaatgacttcagg
cgccagttggacaaacttcaaaaacaatcttctggtgtcaaaggtgatctaccaactgag
caagctgctaagaagcaaaaggtgggaattgcagctgatcctgcaaaagcttcaattcca
agtttgtctgaacctggtgcacctacaacaataccatgcactgtagggatgacagataaa
aacaaatcaacagagaatgttgggtctcatggtccaacatcaaatgccactatgtcattg
caggagtctaagagctcaaagcagcaatctcgtccatcagcacctactgggtatccattc
ttgatgaataaatacaaattagacaaccggcctactgcttttagagttattccacctttg
ccttctggttttgcagatgttgatgttctgaaggagcacttcttacaatatggtgatctt
tctgccgtggagatagaagatgtggaaaatgataatgatatgggatcagaagcaatgaat
aattgctccattgttataacttatggcacacgctggtcagctgaaagggcatacgtaaat
ggtaaatgctggcagggcaataatttgcaatttacatggttgacatctagcaattctagc
aatgaccctagtagcaaagaaacttcatcttctacaccgaaggggactttagaagctgat
gtccagacagaaggagaattagaattcagtgtctccccggaagtcattgcttcaggtgat
aaggaatctaagaattcagaaggcgagagttttgtggagaatatggcattgcctgaagtt
tccgagcatagctcatccccatcgtcttgcatgaaagagtcacctaaaggcgacgcatgt
taa
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