Gossypium hirsutum (upland cotton): 107926274
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Entry
107926274 CDS
T04793
Name
(RefSeq) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107926274
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107926274
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Motif
Pfam:
Rhamnogal_lyase
fn3_3
CBM-like
CarboxypepD_reg
RhgB_N
Y_Y_Y
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
107926274
NCBI-ProteinID:
XP_040939961
UniProt:
A0A1U8LDA8
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Position
A12:53236496..53243123
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AA seq
569 aa
AA seq
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MKEKVMQLNQIHSRHHVFWVFIIVHFSLLLFSAFSADIPPRKILNGEKKKSRKVELHMED
NRVFIDNGLVEVTIENPSGHLSGITYKGMLNVLETRNNNNNKGYWDIVWDNEAYDKLATQ
HVKIITETEELVELSFTKMWDITKDHGNSVPLNVDKRYIVRRGVPGLYMYGILERQEDFP
DAHMYQIRIAFKLNENKFHFMAISDTKQRIMPSQEDRDESRSQVLAFKEAVLLTNPTNPQ
LKGEVDDKYQYSSENKDNKVHGWISDDDAVGFWVITPSNEFRTGGPHKQDLTSHVGPTAL
SMFVSTHYTGTEMDVLYKKGETWKKVLGPVFMYLNSASWDEARHYRNALWNDANRQLREE
IQSWPYNFTASEDFPHAQQRGEVNGQLLVRDQSLDKQLMQAKSAFVGLAAPGYAGSWQTE
GKGYQFWTQTGNTGRFTIKNVRPGEYNFYAWVYGFIGNYKLNLKITIQPGNKINLGTLIY
DPPRNGPTLWEIGIPDRTAAEFFIPEPNPTFVNSILNHDADEFRQYGLWDRYSDIYRDGD
LVFTVGVSNYSKDWFFAHVPSSKGNHMAD
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagaaggtgatgcagctaaaccagattcactccaggcaccatgttttttgggtt
ttcatcatcgttcacttttcattactccttttctcagctttctctgcagatatcccaccc
agaaaaatcttaaatggtgaaaaaaagaagtctcgtaaagtcgagttgcatatggaagat
aacagagtttttattgataatggacttgttgaggtaactatagagaatccttctggccat
ttatcaggaattacatataagggaatgcttaatgtgcttgaaaccagaaacaataacaac
aacaaagggtattgggacattgtctgggataatgaagcctatgacaaattagctacacaa
cacgtcaagatcattacagaaactgaggagttagttgagctttccttcaccaaaatgtgg
gacataacaaaagaccatggcaattcagttcctttaaacgtagacaaaaggtatatagta
cgacgaggcgttccaggcttgtatatgtatggtattttggagcggcaagaagattttccc
gatgctcatatgtatcaaataaggatagcttttaagctcaatgaaaacaagtttcatttc
atggcgatatcagacacgaaacaaaggattatgcctagccaagaagatcgagatgagagt
cgcagtcaagttctagctttcaaagaagctgttctgttgacgaatccaaccaatccacaa
cttaaaggagaggttgacgacaagtaccaatattcgagtgagaacaaagataacaaggtt
catgggtggatatcggatgatgatgctgtcggtttctgggtgatcacccctagcaatgag
ttccgaactggtggcccgcacaagcaggacctcacttctcatgttggtcccacagccctc
tccatgtttgttagtactcattatacggggacggagatggacgtattgtataagaaagga
gagacttggaaaaaggttttgggccctgtttttatgtatctcaactcggcatcttgggat
gaagctcgtcattatcgcaatgcgctgtggaatgatgctaatagacagttgcgtgaagaa
atccaaagttggccttacaatttcactgcgtcagaagattttcctcatgctcaacaacga
ggagaagttaatggtcaattgctagtgcgagatcaaagcttggataagcaactaatgcag
gcgaaatctgcgtttgtggggttggcagcgcctggatatgcaggatcatggcaaacggaa
ggaaagggctaccagttttggactcaaacaggcaacactggccgtttcactataaaaaat
gtccgaccaggggagtataatttttatgcatgggtctatggtttcattggaaactataaa
ttaaatctcaaaatcactatccaaccaggaaacaagatcaacttgggtacccttatatac
gatcccccaagaaatggccctacattgtgggaaatagggattcccgacagaacagctgct
gagttcttcatacctgaaccaaacccaacatttgttaactcaatcctcaaccatgacgcc
gacgaatttagacaatacggattgtgggatcggtactcagatatttatcgtgacggtgat
cttgtctttacagttggtgttagcaattattctaaggattggttctttgctcatgttccc
agctccaagggcaaccacatggcagattaa
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