Gossypium hirsutum (upland cotton): 107926415
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Entry
107926415 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107926415
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107926415
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107926415
NCBI-ProteinID:
XP_016712755
UniProt:
A0A1U8LDU3
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Position
D07:58287585..58289342
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AA seq
405 aa
AA seq
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MDFSTFSIFHIFILPLLCPSLVSSSAVRDPESVVAEVHKSINASRRHLGYLSCGTGNPID
DCWRCDPNWESNRQKLADCGIGFGKDAIGGKNGRIYVVTDAGDDDPVNPKPGTLRHAVIQ
DEPLWIIFKRDMVITLKEELVMNSYKTIDGRGASVHISGGPCITIHYVSNIIIHGINIHD
CKPGGSTTIRDSPEHAGHWTPSDGDGVSIFNSKNIWVDHCTLSNCKDGLIDVIHGSTAVT
ISNNYMTHHDKVMLLGHSDEYTQDKDMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYT
HWEMYAIGGSANPTINSQGNRFLAPDDGSKKEVTKHEDAPESEWRNWNWRSEGDLMLNGA
FFRQTGGGASSTYARASSLSARPSSLVGPMTATAGALSCKIGSHC
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggatttctcaacattctcaatctttcacattttcatccttcctctcctttgtccttct
cttgtttcttcttcggcagttcgagaccctgaatctgtcgtagctgaagttcataagagc
ataaatgcttcgaggaggcacttgggttacttgtcatgtggaacggggaaccctattgat
gactgctggaggtgtgaccccaattgggagagtaatcgtcaaaagctagctgattgcgga
atcgggttcggaaaggacgcgattggcggaaagaacggtcgaatctatgtcgttaccgat
gccggtgacgatgaccctgtaaaccctaaaccgggtactttgaggcatgcagtgattcaa
gacgagccattgtggatcatattcaagagggatatggtgatcactttgaaggaagagttg
gtgatgaactcttacaagacaatcgacggacgaggtgccagcgttcatatatcgggaggg
ccatgcattaccatacattacgtatccaacatcatcatccatggcatcaacatacatgat
tgtaaaccgggtgggagtactaccataagagactcacctgagcatgcaggccattggact
ccgtcggatggtgatggggtatccatctttaatagcaagaatatatgggttgaccattgt
accctctctaattgtaaagatggattgattgatgtgatccatggatccacagcagtgacc
atctcaaacaactacatgacgcatcatgataaagtcatgcttttgggacacagtgatgag
tatacgcaagacaaagacatgcaagtcactgttgcctttaaccattttggggaaggtctt
gttcagagaatgccaaggtgtcgacatggatattttcatgtggtgaacaatgattataca
cattgggaaatgtatgccattggaggaagtgcaaaccctacaatcaacagccaagggaat
agatttctagcgccagatgacggttctaagaaagaggtgaccaagcatgaggatgcaccg
gagagcgagtggcgaaactggaactggaggtcggaaggagacttgatgttgaacggagct
ttcttcaggcaaaccggaggcggagcatcatcgacctatgctagggcttctagtctgagt
gctagaccatcttctcttgtgggtccaatgaccgccactgctggtgcacttagctgcaag
attggatcccactgctag
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