Gossypium hirsutum (upland cotton): 107926421
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Entry
107926421 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107926421
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107926421
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107926421
NCBI-ProteinID:
XP_016712764
UniProt:
A0A1U8LHW3
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Position
A07:97884549..97886269
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AA seq
405 aa
AA seq
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MDFSTFSIFHIFILSLLFPSLVSSSAVRDPESVVAEVHKSINASRRHLGYLSCGTGNPID
DCWRCDPNWESNRQKLADCGIGFGKDAMGGKNGRIYVVTDAGDDDPVNPKPGTLRHAVIQ
DEPLWIIFKRDMVITLKEELVMNSYKTIDGRGASVHISGGPCITIHYVSNIIIHGINIHD
CKPGGSTTIRDSPEHAGHWTPSDGDGVSIFNSKNIWVDHCTLSNCKDGLIDVIHGSTAVT
ISNNYMTHHDKVMLLGHSDEYTQDKDMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYT
HWEMYAIGGSANPTINSQGNRFLAPDDGSKKEVTKHEDAPESEWRNWNWRSEGDLMLNGA
FFRQTGGGASSTYARASSLSARPSSLVGPITATAGALSCKIGSHC
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggatttctcaacattctcaatctttcacattttcatcctttctctcctttttccatct
cttgtttcttcttcggcagttcgagaccctgaatctgtcgtagctgaagttcataagagc
ataaatgcttcgaggaggcacttgggttacttgtcatgtggaacggggaaccctattgat
gactgctggaggtgtgaccccaactgggagagtaatcgtcaaaagttagctgattgcgga
atcgggttcggaaaggacgcgatgggcggaaagaacggtcgaatctatgtcgttacggat
gccggtgacgatgaccctgtaaatcctaaaccgggtactttgaggcatgccgtgattcaa
gacgagccattgtggatcatattcaagagggatatggtgatcactttgaaggaagagttg
gtgatgaactcttacaagacaatcgacggacgaggtgccagcgttcacatatcgggaggg
ccatgcattaccatacattacgtatccaacatcatcatccacggcatcaacatacatgat
tgtaaaccaggtgggagtactactataagagactcacctgagcatgctggccattggact
ccgtcggatggtgatggggtatccatctttaatagcaagaatatatgggttgaccattgt
accctttctaattgtaaagatggattgattgatgtgatccatggatccacagcagtgacc
atctcaaacaactacatgacccatcatgataaagtcatgcttttgggacacagtgatgag
tatacgcaagacaaagacatgcaagtcactgttgcctttaaccattttggggaaggtctt
gttcagagaatgccaaggtgtcgacatggatattttcatgtggtgaacaatgattataca
cattgggaaatgtatgccattggaggaagtgcaaaccctacaatcaacagccaagggaat
agattcctagcgccagatgacggttctaagaaagaggtgactaagcatgaggatgcaccg
gagagcgagtggcgaaactggaactggaggtcggaaggagacttgatgttgaacggagct
ttcttcaggcaaaccggaggcggagcatcatcgacctatgctagggcttctagtctgagt
gctagaccatcttctcttgtgggtccaattaccgccactgctggtgcacttagctgtaag
attggatcccactgctag
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