Gossypium hirsutum (upland cotton): 107926806
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Entry
107926806 CDS
T04793
Name
(RefSeq) pseudouridylate synthase 7 homolog isoform X1
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ghi03016
]
107926806
Enzymes [BR:
ghi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
107926806
Transfer RNA biogenesis [BR:
ghi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
107926806
Prokaryotic type
107926806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
107926806
NCBI-ProteinID:
XP_016713218
UniProt:
A0A1U8LIG1
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Position
D11:complement(58841969..58847928)
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AA seq
733 aa
AA seq
DB search
MWRCGVSSLKPNCYFHCKRNYLSLSKSNLTKHPITKYSNYSSLTMTTITESDVGILCFIS
NLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEAFQEGETKISDQLNKNYASEIE
KFRSLACEIDVDQLEAFINQITSGSEEDISPIVLSPDSDKSHRTAMHNFFKENLRFLVTD
TVDGPDSSSKCIRVRLNSGNKNKGRNSNKRKRGDRPYDSRGSSHWPAHLGNFLRFHLFKE
NKDTQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQYASRLAALNDRLIGIKV
GDFCYVKDDLLLGQLLGNRFTIVLRGVVADSEDTIQASAESLGRHGFINYFGLQRFGSGS
IPTHHIGATLLRGEWKAAASTILDPREGERNIISKAREYYKQTGDIDGTLKQLPRHLVAE
RAMLQCLKKSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASVRVQKYGSSEVVLGDLV
YSKGDDAEKTEVVPPEHEDNSLEDAYDCGQLDEISGKDLPLEKNNLVKVITASDISTGNY
NIEDVVLPMTGSRIIYPMNEVADVYRDMAKKDGISLTESVHNIKEFSITSMTGSYRRVFQ
KPIDFRWDLLSYTDGNLALSETDIDKIAKTKPVNPVKEENPTNGTEGEEPFNHLEQLESF
EDEKKFSTDDNEVEVSREAEPPQVHSPPDLNSLEPQKALKLAFTLPASCYATMAIRELLK
TSTSVAFHKTLNQ
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgttgtggtgtctcaagtctaaaacccaactgttacttccactgcaaacggaac
tacttgtcactttcgaaatcaaacttgacaaaacacccaatcacgaaatactcaaattat
tcaagtctaacaatgacgaccatcaccgaatccgatgtgggaatcctctgtttcatctca
aaccttcctggttttcgtggcatcctcaaacaaagatattctgatttcattgtgaatgaa
gtagacactgagggaaatgttgttcatttgacctctttagatgcccctccagaggctttt
caggaaggtgaaacaaaaatatctgatcaacttaacaaaaattatgcatctgaaattgaa
aaattcagatcacttgcctgcgaaattgatgtcgatcagttagaagctttcattaaccaa
attacttcaggcagtgaagaagatatctctcccattgttctgtctccagattctgataaa
tctcatcgaacggcaatgcataatttctttaaggagaatcttagatttctagtcactgac
actgttgatggacctgattcttcctcaaaatgcatccgcgtgaggttaaattctgggaat
aagaacaagggaagaaattcgaataaaaggaagagaggtgataggccctatgatagtaga
ggttcaagccactggccagcgcatcttggcaattttcttaggttccatcttttcaaggag
aataaagatacacaggaagccttaggattaataggaaagatgcttggcattcagccaagg
tcttttggttttgcgggtacaaaagataagaggtcagtttccactcaaagggtaactgtt
ttcaagcagtatgcaagtagattagctgccctcaatgacaggttgattggtattaaggtg
ggagacttctgctatgtcaaggatgacctcctccttgggcagcttttaggaaaccgattc
accattgtattgcgaggagttgttgcagattctgaagatactattcaagcatctgcagag
tccttggggaggcatggcttcatcaactattttggcttacaacgttttggaagtggttct
attccaactcaccacattggtgccacattactgcgaggcgaatggaaagctgctgcaagc
actattcttgatccaagagaaggggaaagaaatatcataagcaaggcaagggaatattat
aaacaaactggtgacatagatggtactctcaagcaattacctcgccatttagttgcagaa
agggctatgttgcaatgtttgaagaaaagtcctgggaattacttgcaagccctgaaagct
atacctaggacgttgagaatgatgtatgtacatagttaccaaagctatctgtggaaccat
gcagcaagtgtgagagtgcaaaaatatggaagcagtgaagttgtgttgggagacttggta
tatagcaaaggagatgatgcggaaaaaacagaagttgtaccacctgaacatgaagataat
agcttagaagatgcttatgattgtggtcaattagatgaaatatctggaaaagatcttccg
ctagagaaaaataatcttgttaaggtcataactgcatcagatatcagtactggaaattat
aatattgaggatgttgtccttcctatgaccggctctagaataatttatccaatgaatgag
gttgctgatgtttatcgtgacatggcaaagaaggatggcatcagcttgacagagagtgtc
cataatatcaaggaattttcaataaccagcatgactggaagctacaggcgtgtttttcag
aagccaatagattttcgatgggatttgctttcgtatacagatggaaatttagcattgtcg
gagacagatatagacaaaattgccaaaactaaacctgtgaacccagtcaaagaagagaat
ccaaccaatggaactgaaggcgaagagccattcaatcatctggaacaattagagagcttt
gaggatgagaaaaagttctcaaccgatgataatgaggtggaggtttctagagaagccgag
cctccacaagttcattctccacctgacttgaattctctggaacctcagaaagctctcaaa
ttggccttcacacttcctgcttcttgttatgccacaatggccatacgagagcttctcaag
acatccacttctgttgcattccacaagacacttaaccaataa
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