Gossypium hirsutum (upland cotton): 107927029
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Entry
107927029 CDS
T04793
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ghi03016
]
107927029
Enzymes [BR:
ghi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
107927029
Transfer RNA biogenesis [BR:
ghi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
107927029
Prokaryotic type
107927029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
107927029
NCBI-ProteinID:
XP_016713483
UniProt:
A0A1U8LJ70
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Position
D03:complement(50615582..50618690)
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AA seq
509 aa
AA seq
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MAISCLRLSLAPWLVKTPRPRPPLKVTPFRIICTAQSSVVDEKELPLPLSACKWEPFRKK
KVVMRVGYVGTDYRGLQLQRDEHELSTIENELETAIFKAGGIRDSNYGDLHKIAWARSSR
TDKGVHSLATMISLKMEIPEDAWKEDPNGIALAKCVNSYLPDNIRVFSILPSQKSFDPRR
ECNLRKYSYLLPAEIIGIKSHFTEAETNYHISDFNNILNCFEGEHPFHNYTQRAKYRRRV
PPRQTARNGRPPRAKSHNGSSTSEMEESDVEEDTRIDETSTVNNEEMSCGFGEPVVDSCN
SQGNGSKDQSPKVVIARWLHEPDETDRITGSHFRKIFHCSCGKLQNSMGFDYVEISIWGE
SFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKFSRVVLPLAPSEVLILRGNTFILRKAP
GNVTRPEMLTMVESKEILKAVDEFYKSVMLPQVSKFLDPSKSPWEEWVENLDFNTGIPDA
ELDEVRNAWKLWKEKLPIRRTSSAQAVSL
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggccatttcttgtctgagactatccttggctccatggctggtgaaaactccaaggcca
aggcctcctttgaaagtaacaccttttcgaatcatttgcactgctcagtcctctgtagta
gatgaaaaggagctgcctctccctctctccgcctgcaaatgggaaccttttcgcaagaaa
aaggtggtcatgcgggtcggctacgttggcaccgactacagaggtcttcaactgcagcga
gatgaacacgagctatctactattgaaaatgaactggaaactgccattttcaaggctgga
ggaatccgtgacagtaattatggtgatctgcacaaaattgcttgggccagaagcagccga
acagataaaggagttcactctttggcaacaatgatctccttgaaaatggagatacctgaa
gatgcttggaaggaagaccccaatggcattgccctggctaaatgtgttaactcttatctt
cccgacaatatccgagtcttcagtatattaccttcacaaaagagtttcgatcctagaagg
gaatgtaatctccggaaatattcctaccttctaccagctgaaatcattggaataaaaagt
cacttcactgaagctgaaactaattatcatatatcagacttcaacaatatattaaactgt
tttgagggtgaacaccctttccataattatactcaaagagccaagtacagaagacgagtt
cctcctaggcaaactgccagaaatggtcgtccaccaagagctaaatctcataatggctca
tcaacttccgagatggaggaaagtgatgtagaggaagatacaaggatcgatgaaacaagt
acagtaaataatgaggaaatgtcttgtggttttggtgaacctgtggttgattcttgtaac
agtcagggcaatggctcgaaggatcaaagtcccaaggtagttatagcaagatggttacat
gaacctgacgagacagatagaatcacaggttcccactttcgaaaaatttttcactgttct
tgtggaaagctgcagaattcaatgggatttgattacgttgaaatttccatatggggagag
tctttcatgctacatcagatccgcaaaatggttggtactgccgtagctgtgaagcgcaaa
ttgctcccaagagatattctaacattatcgctagccaaattctcacgggttgtccttccc
cttgctccatctgaagttctaattttgagggggaacacattcatattgagaaaggcgcct
ggtaatgtaacaagacctgaaatgctgacgatggttgaatcaaaagaaatcctcaaggca
gttgatgagttctacaaatctgtaatgttgccgcaagtttcaaaatttttggacccttcc
aaatcaccctgggaagaatgggttgaaaatttagattttaacacaggcattcccgatgca
gagttggatgaagtcaggaatgcttggaagctgtggaaggagaagttgccgattaggcga
acttcttctgcacaggcagtgagcctataa
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