Gossypium hirsutum (upland cotton): 107927308
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Entry
107927308 CDS
T04793
Name
(RefSeq) ATP-dependent DNA helicase Q-like SIM isoform X2
KO
K10900
werner syndrome ATP-dependent helicase [EC:
5.6.2.4
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
107927308
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107927308
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107927308
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
107927308
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
107927308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
UBA_7
ResIII
UBA
UBA_9
T4SS-DNA_transf
Motif
Other DBs
NCBI-GeneID:
107927308
NCBI-ProteinID:
XP_016713862
UniProt:
A0A1U8LK90
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Position
D11:complement(61458743..61465699)
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AA seq
882 aa
AA seq
DB search
MGGNDVSSDQVIKKLIEMGFEHSNAIEAVKAVGPSVDDAVEYVLNGCGRNPLSGTTSFQC
SSRNVKNLGKRVMTSSQSNGEIRQSRTWEHFQPTSKPKRSRGNDVSDGVMSGSKVLPSPV
EEHKEPNLLIDNQFENVAEPSQVCSSEELNIGTNWESKVNGLLRKHFGYSSLKSFQKEAL
AALLAHEDCLVLAATGSGKSLCFQIPALLTGKVVVVVSPLISLMHDQCLKLSEHGVSACF
LGSGQPDSSVEQKAMRGMYSIIYVCPETILRLIKPLQRLAESRGITLFAIDEAHCISKWG
HDFRPDYRRLSVLRENFSARNLKFLKYDIPIMALTATATVQVRQDILDSLCMSKETKIVV
TSFFRPNLRFSVKHSRKSVSSYGTDFCQLIDVYARKKKVDGMKQPLVSHESHCPSDSDKF
SGSGFNDIQNSDIEESDDESSEKENGSIPSRGRQMSVEYLENEVDVFQSAEDWDVAYGEF
SGQVHCEEWNSHGSIEKIDPPNKPEERLRLLQEPLEQGPTIIYVPTRKETLSIAKYLCKF
GVKAAAYNAALPKSHLRQVHKEFHEDSLQVVVATMAFGMGIDKLNVRRIIHYGWPQSLEA
YYQEAGRAGRDGKLADCILYVNLSRMPTLLPSKRSEDQAKRAYKMLSDFFRYGMNTSCCR
AKILVEYFGEDFGDKKCLLCDICVDGPPKMLDLKEEANILMQMIAARYAESGFMDYSYDD
SLCSDTERRKFLVKPNLRVFVNKIREQSQKFITADLLWWKGLARIMEAKGYIREGDDKIH
VQIKFPEPTKRGLEFLQSESDEGFHVYPEADMLYLMRKPRAYSSFSDWGKGWANPEIRRQ
RLDKIRSSNRKPRKPRIRKSRKHFSDTSTSRGRISAKISQKK
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaaacgatgtgtcgtctgatcaagttattaaaaaacttattgaaatgggattt
gagcattctaatgccatagaagctgtaaaagctgtaggaccgtcagttgatgatgcggtt
gagtatgttttgaatggttgtggtaggaatcctctcagtggaacaactagttttcaatgt
tcttcaagaaatgtaaagaatcttggtaagagggttatgacatcttcgcaatctaacggt
gaaatccggcagtctaggacatgggaacattttcaacccacaagtaaacctaagcgaagc
agaggtaatgatgtttctgatggggtcatgtctggatccaaggtgttgcctagtcctgtg
gaagaacacaaggaaccaaatctgcttatagataatcagtttgaaaacgtggcagaacct
tcccaagtttgcagttctgaggagctgaatattggaacaaattgggagtcgaaggttaat
ggtttattaagaaagcattttggttattcatccttgaagagtttccagaaggaagccttg
gctgctttgcttgctcatgaagactgtcttgttcttgctgcaacaggatctggaaagtct
ctctgtttccagattccggcattattaacaggaaaggttgtagttgtggtttctcctttg
ataagcttgatgcacgatcaatgcttaaaattatcagaacatggggtctctgcttgtttt
cttggatctggacaaccagacagcagtgtggagcagaaagcaatgagaggaatgtatagt
attatatatgtttgtccagaaacaattctgagactgataaaacctcttcagaggctagca
gaaagtcgtggaatcacattgtttgcaattgatgaagcccattgtatatctaagtggggc
catgattttcggcctgactatcggcgattgtctgttttgcgagagaatttcagtgccaga
aatttaaaattcttgaagtatgacattccaattatggcattgactgctactgcaacagtt
caggttcggcaagacattcttgattctttgtgcatgtcaaaggagacaaagattgtggtc
acttcattcttccgtccaaatttgcgattctcagtgaaacacagtagaaaatcagtgtct
tcatatggcacagatttctgtcaacttatagatgtttatgccagaaagaaaaaggttgat
ggaatgaaacaacctctagtttctcatgaatctcattgtccatctgattcagataaattt
tctggaagtgggtttaatgacattcaaaacagtgacatcgaagaaagtgatgatgagagt
tcagaaaaggaaaatggttcaattccttcaaggggaaggcaaatgtcagttgagtattta
gaaaatgaggttgatgtctttcagagtgcggaagattgggatgttgcctatggtgaattt
tctggacaagttcattgcgaagaatggaattcacatgggtcaatagagaaaatagatcca
ccaaataaaccagaagaaagactgaggcttctgcaagagccattggaacaaggaccgacc
atcatatatgttcccacaagaaaggaaaccctgagcattgcgaagtatctctgcaaattt
ggagtaaaggctgccgcttataatgcagcgttgccaaaatcacatttaaggcaggttcac
aaggaatttcatgaagactccctgcaggttgttgttgccacaatggcttttggaatgggg
attgacaaattaaatgtccgaagaatcatacattatggttggccacagagtttggaagca
tattatcaagaagctggtcgagccggaagggatggaaaattagcagattgcattttatat
gtgaacttatcaagaatgccaacacttctgcctagtaaaagaagcgaagatcaggcaaaa
cgagcttataaaatgttatcagatttcttcagatatggaatgaatacttcttgctgtcga
gccaaaatccttgttgagtactttggggaggatttcggtgataagaagtgcctcttgtgc
gacatttgtgttgatggacctcctaagatgctggatttgaaagaggaggcaaacattttg
atgcaaatgattgctgctcgttacgcagagagcggtttcatggactactcatatgatgat
tctctgtgtagtgatactgaacggcgaaaattcctagtgaagccaaaccttagagttttt
gttaataaaataagggagcagtctcaaaaattcataaccgctgatctgctatggtggaaa
ggtcttgctcgaatcatggaagctaaaggatatatcagagagggggatgataagatccat
gttcagataaaatttccggaaccaacaaaaaggggactggaatttcttcagtctgagagt
gatgaaggtttccatgtttacccagaagcagatatgctttacttaatgagaaaaccgaga
gcttattccagtttctccgattggggaaagggctgggctaatcctgagatccgtcgtcag
cgtttagacaaaattcggtcttcaaacaggaaaccacgaaagccaagaataaggaaatca
agaaaacatttctcggatactagtacttctcggggtagaatatctgcaaaaatctcgcaa
aagaagtga
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