Gossypium hirsutum (upland cotton): 107927582
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Entry
107927582 CDS
T04793
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03410
Base excision repair
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107927582
03410 Base excision repair
107927582
03420 Nucleotide excision repair
107927582
03430 Mismatch repair
107927582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
107927582
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107927582
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107927582
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107927582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
RCF1-5-like_lid
AAA_22
AAA_30
PTCB-BRCT
Rad17
AAA_19
AAA_assoc_2
Gp44_lid
AAA_18
nSTAND3
BRCT_2
RuvB_N
AAA_5
DNAX_ATPase_lid
AAA_16
Zeta_toxin
AAA_14
AAA_24
AAA_28
Sigma54_activ_2
RsgA_GTPase
NTPase_1
TsaE
Motif
Other DBs
NCBI-GeneID:
107927582
NCBI-ProteinID:
XP_016714165
UniProt:
A0A1U8LI07
LinkDB
All DBs
Position
A05:complement(108126833..108138488)
Genome browser
AA seq
990 aa
AA seq
DB search
MSDIRKWFMKAHDKGKGNGTASNPANAAETKTDSVPGGQENSGRRKTSKYFPAEKQKPKD
EQENEELPVKRKVQDESSEKAPPSKKPSKVDVDDDFVLPKSKNSVDVTPSKKLKSGSGKG
VAQKAVDIDGSDEDDVKDLKSPVKSGGKVRGGRGALKGPAGGRGRGGDIDESDEEDIKDL
ESPVKSGGRGRGGRGASTGSASGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLNG
LTFVISGTLDSLEREEAEDLIKRYGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTKF
LTEDGLFDMIRASNHGKAPLKGQSNKSAVTVAPSLPKKSPQKTEVKTTLTKSPSPSVSSA
KKRGQPVQHSSLPWTEKYRPKVPNEITGNQSLVKQLHDWLTQWNKQFLGTGSKGKGKKQN
DAGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQTIEVNASDSRGKADANVSKGIGGSNANS
IKELVSNEALGVNMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIRISKIPIICICND
RYSQKLKSLVNYCLLLSYRKPTKQQMAKRLMQIANAEGLQVNEIALEELAERVNGDMRMA
LNQLQYMSLSMSVINYNDIKQRLLSSSKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMS
DPDLVPLLVQENYINYRPSSIGKDDSGIKRMNSIARAAESIGDGDIINVQIRRYRQWQLS
QTSALSSCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNYRLLEDFHVHFLASR
ESCSGRETLRLEYLPILLKRLTNPLRDMPKDEAVKQVLEFMNAYSISQEDFDTIVELSKF
QGYPNPMEGIPSAVKAALTKAYKEGSKTRIIRAADLVTLPGMKKAPKKRIAAILEPSDDV
LGEENGDELPENDENTSDSEDLEGTTNGEKLQAELQSLNSKGIEVQMELKGTGNSSAKKA
PSGRAKGGGRATSAEKKGGRGSGAGAKRKR
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatattaggaagtggtttatgaaagcacatgataaaggcaaaggcaatggcact
gcttcaaatccggcaaatgcagcagaaaccaaaacagattctgtacctggaggccaagaa
aattcgggcagaaggaaaactagtaagtattttcctgcagaaaagcaaaagccaaaagat
gaacaagaaaatgaggaacttccagtcaagagaaaagttcaagatgaaagtagtgaaaaa
gccccaccttcaaagaaaccaagcaaagtcgatgttgatgatgactttgttctgcccaaa
tctaagaactctgtcgatgtcactcctagtaagaaactgaagagtggttcaggcaagggt
gttgcacaaaaagctgtagatattgatggaagtgatgaagatgatgttaaagatttgaag
tctcctgtaaagtcaggtggaaaggttcgtggtggcaggggtgcattaaaaggcccagct
ggcggaagaggcagaggtggtgatattgacgaaagtgatgaagaggatattaaagatttg
gagtctcctgtgaagtctggtggaaggggtcgtggtggtaggggtgcatcaacaggatca
gctagtggaagaggcagaggcggtggacggggtggatttatgaattttggagaaaggaaa
gaccctccacataaaggagagaaggaagtccctgaaggtgcccctgattgcttaaatggt
ctaacttttgtaattagtggaacacttgacagtttagaaagggaagaagcagaggaccta
atcaaacgatatggtggtcgtgttactggatctgtcagcaaaaaaacgaattatctttta
tgtgatgaagatattggaggtcgaaagtcctctaaagccaaagagcttggcactaaattt
cttactgaggatggattgtttgacatgatccgtgcttcaaatcatggaaaagctcctttg
aaaggacagtcaaacaaatctgcagtcaccgttgctccttctctacctaagaagagtccc
caaaagacggaagtgaagacaacattaaccaaaagtccgagtccaagtgtctcatctgcc
aagaaaagagggcaaccagtccagcattcatctctgccatggactgaaaaatataggcca
aaagttccaaatgaaatcactgggaatcagtcactggttaaacaactccatgattggctg
acacaatggaacaagcaatttcttggtactggaagcaagggaaagggcaaaaagcaaaat
gatgctggtgctaaaaaggctgttctattaagtggaacacctggaattgggaaaactaca
tcagcaaagttggttagtcagatgctaggtttccagaccattgaggtaaatgctagtgat
agtcgtggaaaggctgacgccaatgtttctaaaggaataggtggaagcaatgcaaattcc
ataaaggaactagttagcaatgaagccttgggtgttaatatggatcgttcaaaacatcca
aagactgtcctaattatggatgaggtggatggcatgtctgctggtgatagaggtggcatt
gctgatcttattgctagcataaggatttccaaaataccaatcatttgcatctgtaatgac
cgctacagtcagaaactgaagagccttgtaaactactgtttgcttctcagttaccgtaaa
cctacaaaacagcagatggcaaagagattaatgcaaattgcaaatgctgaaggtcttcaa
gttaatgagattgctcttgaggaacttgcagaaagagtgaacggagacatgcgtatggcc
ctaaatcagttgcagtacatgagtctgtccatgtctgttattaattacaatgacataaag
caacgccttcttagcagttccaaggatgaagatatttcccccttcacagctgttgataag
ctgtttggttttaatggtggaaagttgaggatggacgaaagaattgatctaagcatgagc
gatcctgatctagtcccacttcttgttcaggaaaattatatcaattataggcccagttca
attggtaaagatgacagtggaattaaacgaatgaactcaattgcccgagctgctgagtct
attggtgatggtgatataataaacgtgcagattcgaagatatcgacagtggcagctctca
caaactagtgccctttcatcatgtatcattcctgctgcattgctacatggacaaagggag
acgcttgaacagggagaacgcaatttcaatagatttggtgggtggctgggaaagaattca
accatgggcaaaaattataggcttttggaggattttcatgttcatttccttgcttctcgt
gagtcttgttcaggaagagaaactcttcgacttgaatatctcccaattcttctgaaaaga
ttgaccaatccgcttcgagacatgcctaaggatgaagctgttaagcaggttttagagttt
atgaacgcttactcaataagccaagaggatttcgatacaatcgtggagttatctaaattc
cagggctatccaaatccaatggaaggcattccatcagctgtcaaagcagcactgacaaaa
gcatacaaggaaggaagcaaaacacgaattatacgagctgcagatttagtaactcttcct
ggaatgaaaaaagccccaaagaagcggattgctgcaattctagaaccatcagatgatgta
ttaggggaggagaatggtgacgaattgccagaaaatgatgagaacacttcagactcagag
gacttggaaggtactaccaatggtgagaagctgcaggccgaacttcagagtttgaattcg
aaaggaatcgaagtacaaatggagttgaaagggacagggaattcaagtgctaagaaggcg
ccatctggtagagcaaaaggtggtggtagggccacatctgcagaaaagaaaggtgggcgt
ggctcgggagctggtgcaaaaagaaaaaggtaa
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