Gossypium hirsutum (upland cotton): 107927597
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Entry
107927597 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107927597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107927597
03012 Translation factors [BR:
ghi03012
]
107927597
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107927597
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107927597
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107927597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
ABC_tran
Dicer_dimer
Myosin_head
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
107927597
NCBI-ProteinID:
XP_040970407
LinkDB
All DBs
Position
A05:complement(108097131..108117189)
Genome browser
AA seq
1139 aa
AA seq
DB search
MQNPKLRCFLLGFNFTSARVSTFFDSLPFILPNTSSSARFYLPLRRRLCGYAVEQFSDDE
YECDFESHKASSSVANIDEWKWKLGMLLRSENDQEIVSRDKRDRRDYEQISNLAKRMGLY
SEMYGKVVVASKVPLPNYRPDLDDKRPQREVVVPLGLQRRVEGLLQEYLDRLQLNSRKVG
ENSDIANSIDPAEYVNPDENPDSFLDSSVMEKVLQRRSLRLRNMQRAWQESPEGKKMMEF
RKSLPAFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIETGRGAFCSIICTQ
PRRISAMAVAERVSAERGEPLGETVGYKVRLEGMKGKNTQLLFCTSGILLRRLLSDRNLN
GITHVFVDEIHERGMNEDFLLIVLKDLLPRRQDLRLILMSATLNAELFSNYFGGAPKIHI
PGFTYPVRAHFLEDVLEFTGYKLTSFNQIDDYGQEKMWKMQKQLAPRKRKNQITSLVEDA
LNKSSFENYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLR
DQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIRKIVLATNMAEASITINDIV
FVLDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPRCVYEAFS
EYQLPELLRTPLNSLCLQIKSLQVESIGGFLSAALQAPEPLAVQNAIDFLKMVGALDEKE
NLTNLGKFLAMLPVDPKLGKMLIMGAIFRCFDPVLTIVSGLSVRDPFLLPQDKKDLAGTA
KSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFGYILR
EAGLVDEDVAANNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANS
VNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILMLFGGSLSRGAEVGHLKMLQGYI
DFFMDSTLAECYLKLKEELDRLIQKKLQDPSVDILQEGKYLMLAVQELVSGDLCEGRFVF
GRASRKPKDSADNSRFTRDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGM
QFVGKPMKNKQLAERDAAVEALAWLTHTSDNSRGDDGSPLDVTDNMLKLLGKRRRSKRR
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatccaaagctcagatgtttccttttgggattcaattttactagcgctagggtc
tccaccttttttgattcactccctttcatactcccaaatacttcttcttctgccaggttt
tatcttcctctacgacgccgtttatgcgggtacgccgtagagcagttctcagacgatgaa
tacgagtgtgatttcgagagtcataaggcgtcgtcttcggttgccaacattgatgaatgg
aaatggaaactcggcatgctgttacgtagtgaaaatgaccaagaaattgtatctagagat
aaaagagataggagagactatgaacaaatttccaaccttgctaaaaggatgggactttac
agtgaaatgtatggaaaagtggttgttgcaagcaaggttccacttcctaactataggcca
gatttggatgataaacggccacaacgggaggttgttgtaccattaggcttacaaaggaga
gttgagggtttactgcaagaataccttgatcggctgcagttaaattctaggaaggttggc
gagaattcagatattgctaattccattgatccggctgaatatgtgaacccagatgagaat
ccagattcattcctggatagttctgttatggaaaaggttcttcaaaggaggagtttgcga
ttacggaacatgcaaagagcttggcaggaatcacctgaaggcaagaagatgatggaattt
cggaaatctctgcctgcattcaaggaaaaggaaaggcttctgcaagcaattgcacgtaat
caggtcatagtgatatcgggggagactggatgtggcaagaccactcaacttccacaatac
atattggagtcagaaatagaaactggtcgtggagcattctgtagcataatttgcacacag
cctcgaagaatatctgctatggcagttgcagaaagagtgtctgcagaaagaggagagcca
cttggggaaacagttggttataaagttcgattagagggaatgaaagggaaaaatacccaa
ctacttttttgtaccagtggaattttactcaggcggctgctgagtgaccggaacttgaat
ggtataactcatgtttttgttgatgaaatacatgagcgaggaatgaatgaagattttcta
cttattgtgttgaaggatcttcttccacgtcgccaagatttgagattaattttaatgagt
gccactttgaatgctgagcttttctccaattattttggcggggcacctaaaattcacatt
ccaggttttacgtatccggtcagggcacattttctggaagatgttttggaatttactggc
tataagttgacttctttcaatcaaattgatgattatggccaagagaaaatgtggaaaatg
cagaagcaacttgccccacggaaaaggaaaaaccagattacttctcttgtagaggatgct
ctcaacaaatcaagctttgagaattatagttcaagagcacgtgattctcttgcatgttgg
atgcctgattgcataggattcaatcttattgaggcagttctatgccatatatgccgaaag
gaaagaccaggtgctgtgctagtatttatgactggttgggaagatatcagttctttgagg
gatcaacttaaagctcatcctcttttgggagaccctaacagggttctgcttctaacatgc
catggttctatggcaacatctgaacagaaattaatattcgagaaaccgcctcccaatata
cgtaaaattgttcttgctacaaatatggcagaggcaagcattacaatcaatgatatagtt
tttgtgctagattgtggaaaagcaaaagagaccacatatgatgctctgaataatacacca
tgtctgctaccttcctggatatctcaagcatcagcccggcaaagaaggggtagagctggt
cgtgtgcagccaggcgaatgctaccacctatatccgagatgtgtttatgaagctttctct
gagtatcaacttcctgaacttctgagaactcctttgaattctctctgcttgcaaataaaa
agtttgcaggttgaaagcattggaggattcttgtcagcagctttgcaagcaccagaacca
ttggctgtccaaaacgccattgattttctaaaaatggttggggcactagatgagaaggaa
aatctcactaatctaggaaagtttttggcaatgcttcctgtagatcccaagcttgggaaa
atgctaatcatgggtgccatcttccgttgctttgatcctgtattaacaatagtgtctgga
cttagtgtcagggatccttttcttttgcctcaagacaagaaggatttagctgggacagcc
aagtctagattttctgcgaaagactacagtgatcacatggctcttgtccgtgcttatgaa
gggtggaaggatgcagaaagagaaggatcagcatacgagtattgttggagaaacttcctg
tctgcacaaactcttcaggctattcattctcttaggaagcaatttggttatattctaaga
gaagctggcttggtagatgaagatgtagctgcaaacaataaattaagtcacaaccagtct
ctagttcgagctgtcatatgctccggactctttcctggaatagcatctgtagtgcacaga
gagacatcaatgtcttttaaaacaatggatgatggccaggttttgttatatgctaattct
gtgaatgcacggtaccaaacaataccttatccgtggctagtgtttggtgaaaaagtaaag
gtcaatacagttttcatacgtgactccactggcgtatcggattctatattaatgctcttt
ggtggctctctaagccgtggggcagaggttgggcatttgaaaatgttgcaagggtacatt
gatttcttcatggattctaccttggctgaatgctatttgaagctcaaagaagaacttgat
agacttattcagaagaagcttcaagatcctagtgttgatattctccaggaagggaagtac
cttatgcttgcagttcaagagctagtgtctggagatctatgtgaagggcgatttgttttt
ggccgtgcaagtaggaagcccaaggattctgctgacaacagtagattcacgagggatgga
acaaatccgaagagcttgctacaaactttgttaatgagggctgggcactcacctccaaaa
tacaagacgaagcatctaaagacaaatgaatttagggcactggtggaattcaaaggaatg
cagtttgtgggaaagcctatgaaaaacaagcagcttgctgagagggatgccgctgtagaa
gcattggcatggttgactcatacctctgacaatagtcgtggtgatgatggttcccctctt
gatgtcactgacaacatgttaaaacttttggggaagcgtcgaagatcaaaaagacgatag
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