Gossypium hirsutum (upland cotton): 107927925
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Entry
107927925 CDS
T04793
Name
(RefSeq) coatomer subunit alpha-1 isoform X1
KO
K05236
coatomer subunit alpha
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107927925
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107927925
Membrane trafficking [BR:
ghi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
107927925
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107927925
Exosomal proteins of bladder cancer cells
107927925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
107927925
NCBI-ProteinID:
XP_016714536
UniProt:
A0A1U8LIU6
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Position
A03:112149494..112155272
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AA seq
1213 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
MSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEHPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDVSSLKKKGASPADDILR
LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAAHP
EINLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRCYDFSTQKETQIVPIRRPG
STTLNQCPSTLSYSPTENAVLICSDVDGGTYELYQIPKDSIGRNDLQEAKRGPGSSAIFV
ARNRFAVLDKSNNQVLIKNLKNEVVKKSGLPVPTDAIFYAGTGNLLCRSDDRVVVFDLQQ
RLVLGDLQTPFVKYVVWSSDMESVALLSKHSIIITSKKLVHQCTFHETIRVKSGAWDENG
VFIYTTLNHIKYCLPNGDSGIIRTLDVPIYLTKVSGNKIFCLDRDGKNKTLVIDATEYIF
KLSLLRKRYDHVMSMIRNSQLCGEAVIAYLQQKGFPEVALHFVKDEKTRFNLAIESGNIQ
IAVASAKEIDDKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLINGNLEKLSKM
LKIAEVKNDIMGQFHNALYLGDIQERVKILENAGHLPLAYVTASVHGLDDVAERLAAELG
DDVPSLPEGKKPSLLMPPAPVICGGDWPLLRVMKGIFEGGFDSTGRGAVDEEEEGADGDW
GEDLDMVDADGLQNGDVTTILEDGEVAEDNEEGGWDLEDLELPPEVETPRVNARSSVFVA
PTPGMPVSQIWSQRSSLAADHAAAGNFDTAMRLLSRQLGIRNIAPLKSMFLDLHTGSHSY
LRAFSSAPVVSLAVERGWSESASPNVRGPPSLVFNFSQLDEKLKAGYKATTDGKFTEALR
LFLSILHTIPLIVVESRREVDEVKELIIIAKEYVLGLQMELKRRELKDNPVRQQELAAYF
THCNLQMPHLRLALRNAMTICCKAKNLATAANFARRLLETNPNENHSKAARQVLQVSERN
MTDASELNYDFRNPFVTCGATYVPIYRGQKDLSCPYCTTRFVPTQEGQLCTICDLAVIGA
DASGLLCSPSQIR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaagtttgagacgaagagtaatagagtgaagggactaagtttccacaccaag
aggccgtggatcttagctagtcttcacagtggcgttattcagttatgggactatcgaatg
gggactttgattgatcgatttgacgaacacgatggccctgttcgtggtgtccattttcac
atgtctcaacctttgtttgtctctggaggggatgactacaagataaaggtctggaactac
aagttgcatagatgtctttttacccttcttggacatcttgattatattcgtactgtgcaa
tttcatcatgaacatccatggattgtgagtgccagtgatgatcaaaccattcgcatatgg
aactggcagtctcgaacttgcatctctgtgttgactggtcataatcactatgttatgtgc
gcctcattccatcctaaagaagacctggttgtgtcggcctcccttgaccagacagttcga
gtttgggatgttagttccttgaaaaagaagggtgcctccccagcagatgacatcttacgg
ttgagtcagatgaacacagatctttttggtggtgttgatgcagttgtcaagtatgtgttg
gaaggacatgaccgaggagtaaattgggctgcatttcatccgactttacctttgatagtc
tctggtgctgatgaccgccaagtgaaattgtggcgtatgaatgataccaaggcttgggaa
gtggataccttgagaggacacatgaataatgtgtcatgtgtcatgttccatgccaagcaa
gacatcattgtatccaattccgaggataaaagtattcgagtgtgggatgcaacaaagcga
actggacttcaaactttccgtcgagaacatgacaggttctggattcttgcagcccatcct
gagattaatcttttggcagctggacatgacagtggcatgattgtatttaagctagagaga
gaacggcctgcttttgcagtcagtggggattctctgttttatgccaaggatcgattctta
aggtgttatgacttttcaacacaaaaagagacacaaatagttcctatccggcggcccggc
tccacaaccctgaatcaatgtccaagtactctttcttatagtcccacagaaaatgccgtt
cttatctgctcagatgttgatggaggaacttatgagttgtatcagataccaaaagacagc
attggtaggaatgacttgcaggaggcaaagagaggtcctggtagttctgctatatttgtg
gctcggaaccgttttgctgtactcgacaaaagcaacaaccaagtcttaatcaagaatctt
aaaaatgaggttgttaaaaaaagtggtcttccggtgcctacagatgcaattttctatgct
ggaacaggtaatttattgtgtagatcagatgatagagtggttgtatttgatctccagcag
agacttgttcttggtgatctacaaacgccttttgtgaagtatgttgtttggtctagtgac
atggagagtgtcgctttgctcagcaagcattccattatcattactagcaagaaacttgtg
caccagtgcacttttcatgagacgatacgagttaagagtggagcctgggatgaaaatggc
gtttttatttacaccactctaaaccatataaaatactgcctacccaatggagatagtgga
ataattcgaacacttgatgttccaatatacctaactaaggtttctggaaacaaaatattt
tgcctggaccgtgatgggaagaacaagacgctggtcattgatgctacagaatacattttc
aagctgtctctgcttcgtaagaggtatgatcatgttatgagcatgataagaaactcccag
ctttgtggtgaggccgtgattgcttatctacaacagaaggggttccctgaagtggccctc
cattttgtcaaagatgagaaaactcggtttaacttggctatagagagtgggaacattcaa
attgctgttgcatctgctaaggagattgatgacaaggatcattggtataggttgggtgtg
gaagcccttcgccaaggcaatgcaggtatagttgaatatgcctaccagaggacaaagaac
tttgagaggttgtcgtttctttatctcataaatggtaacctggaaaagctgtccaagatg
ctgaagattgcagaagtcaagaacgatattatgggccagtttcacaatgctttgtatctt
ggtgatattcaagaacgtgtaaagatcttggagaatgctggtcatttgcctcttgcttat
gttacagcatcagtccatgggctagacgatgttgcggagaggttagctgctgagttggga
gatgatgtcccttctttgccggaagggaaaaaaccttccttattgatgcctccggcaccc
gttatttgtggtggtgattggcccctgttgagagtaatgaaaggtatatttgaaggtgga
ttcgatagtactggcaggggtgcagtggatgaagaggaggagggtgcagatggtgattgg
ggtgaagatcttgatatggtcgatgctgatggcttgcagaacggagatgttactacaatt
ttggaggatggggaagtggctgaagacaatgaagagggtgggtgggaccttgaagacttg
gaactccctcctgaggtagagacaccaagggttaatgctcgttcttctgttttcgtggca
ccaactcctggtatgcctgtgagtcaaatttggagtcagagatcgtcacttgctgctgat
catgcggctgctggcaattttgatacagccatgcgtttgctgagcaggcaacttggaata
agaaacattgctcctttaaaatccatgtttctcgatcttcacactggcagccatagctat
cttcgtgcattttcatctgcgccagtagtgtccttggcagttgagaggggatggagtgag
tctgctagccctaatgtgaggggtccaccctctctcgtattcaacttttctcagctggac
gaaaagctgaaggctgggtacaaggccacaacagatggaaagtttactgaggctcttcgg
cttttcctcagcattcttcatacaattccattgattgttgtggagtcaaggagggaagtt
gatgaagtcaaagagttaattatcatcgccaaggagtatgttcttggtctgcagatggag
cttaagcgtagagaattgaaagacaatccggtacgccagcaggagcttgctgcctacttc
acccattgcaaccttcaaatgcctcatctcagacttgctctgcgaaacgcaatgaccatc
tgttgcaaggcaaaaaacctggctacagctgctaactttgccaggcgtcttctagaaaca
aaccctaacgagaaccattcaaaggcagcgaggcaagtactccaagtttcagagaggaat
atgacagatgcatctgagttaaactatgatttcaggaacccttttgtgacatgcggggca
acttacgtcccgatttaccgaggacagaaagatttatcttgcccttactgtactactcgc
ttcgtgcctacccaggagggtcaattgtgtacaatctgtgatctcgcagtcatcggagca
gacgcatcaggtttgctctgttctccttctcaaattcgataa
DBGET
integrated database retrieval system
