KEGG   Gossypium hirsutum (upland cotton): 107928042
Entry
107928042         CDS       T04793                                 
Name
(RefSeq) coatomer subunit alpha-1 isoform X1
  KO
K05236  coatomer subunit alpha
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ghi04131]
    107928042
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ghi04147]
    107928042
Membrane trafficking [BR:ghi04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    107928042
Exosome [BR:ghi04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   107928042
  Exosomal proteins of bladder cancer cells
   107928042
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st TPR_COPA_B EIF3I WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_WDR41 WD40_RFWD3 Beta-prop_SPT8 NBCH_WD40 Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_WDR19_1st Aa-Ago_N Fis1_TPR_C
Other DBs
NCBI-GeneID: 107928042
NCBI-ProteinID: XP_016714687
UniProt: A0A1U8LJB8
LinkDB
Position
A12:7559069..7565133
AA seq 1218 aa
MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
MSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEHPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGSLKKKTASPADDILR
LSHMNTDLFGGADVVVKYVLEGHDRGVNWATFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHVNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGLQTFRREHDRFWILAVHP
EMNILAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFIRNFDFPTQREAQVIPIRRPG
STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSFGRGDGSLEARKGVGSSAIF
VARNRFAVLDKGNNQVLVKNLKNEVVKKSGLPVPTDAIFYAGTGSLLCRSEDRVVIFDLQ
QWLVLGDLQTPFVKYVAWSNDMESVALLSKHSIIITNKKLVHKCTLHETIRVKSGAWDEN
GVFIYTTLNHIKYCLPNGDSGIIRTLEIPIYITKVSGHTIFCLDRDGKNKSVVIDATEYI
FKLSLLRKRYDHVMNMIRNSQLCGEAMIAYLQQKGFPEVALHFVKDEKTRFNLALESGNI
QIAVASAKEIDDKDHWYRLGVEALRQGNAAIVEYAYQRTKNFERLSFLYLINGNLEKLSK
MLKIAEVKNDAMGQFHNALYLGDIQERVKILENAGHLPLAYITASVHGLQDVAERLAAEL
GDDVPPLPVDKNPSLLIPPTPVMCGGDWPLLRVMKGIFDGGFDGGRGAVDEEEEGAEGDW
GEDLDVVDGLRIGDVSAILEDGEVAEENEEGGWDLEDLELPAEVETPKVSGNGRSSIFVA
PTPGMPVSQIWIQRSSLAAEHVAAGNFDTAMCLLSRQLGIRNFAPLKSMFLDLYTGSHSY
LHALTSAPVVPLAVERGWSESAAPNVRCPPALVFNFSQLDDKLKAGYKATTAGKFTEALR
LFLSILHTVPLIVVESGREVDEVKELIIIAKEYVLGLQMELKRREMKDNPVRQQELAAYF
THCNLQLPHLRLALLNAMTICYKAKNLATAGNFARRLLETNPTNENQAKTARQVLQAAER
KMTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCTARFVPSQDGQLCAVCDIAVVG
ADASGLLCSPSQIRNQIR
NT seq 3657 nt   +upstreamnt  +downstreamnt
atgttgaccaagtttgagacgaagagtaatagagtgaagggactgagtttccatactaag
aggccttggatcttagccagtctccatagtggtgttatccaattatgggactatcgaatg
gggactctgattgatcgattcgacgaacacgatggccctgttcgtggcgtccatttccac
atgtcccagcctttgtttgtctctggaggggatgactacaagataaaggtctggaattac
aagttacatagatgtctcttcacccttcttggacatctggattacattcgtactgtgcaa
tttcatcatgagcatccatggattgtgagtgccagtgatgatcagactattcgcatatgg
aactggcagtcacgaacttgtatctctgtgttgactggtcataatcattatgttatgtgt
gcctcattccatcctaaagaagacctggttgtgtcagcctcccttgatcagactgttcga
gtttgggatattggttccttgaaaaagaagacggcttctccagcagatgatatcttaagg
ttgagtcatatgaacacagatctttttggtggtgctgatgtagttgttaagtatgtgttg
gaaggtcatgaccgaggtgtgaattgggctacatttcatcccaccttacctttaatagtc
tctggagcagatgatcgccaagttaagttgtggcgtatgaatgatacaaaggcttgggag
gtggataccttgagagggcacgtaaataacgtgtcatgtgttatgttccatgccaaacaa
gacatcattgtatctaactctgaggataaaagcattcgtgtatgggatgtaacaaagcga
actggacttcaaactttccgtcgagaacatgacagattctggattcttgctgttcatcct
gagatgaatattttggcagctggacatgacagtggcatgattgtatttaagctagagaga
gagcgtcctgcttttgcagtgagtggggattctctgttttatgccaaggataggtttata
aggaattttgactttccaactcaaagagaggcacaggtaattccaattcgacgtcctggt
tccacaagtctgaatcaaagtccaagaactctgtcttatagtcctacagaaaatgctgtc
cttatctgctcagatgtagatggaggatcatatgagttgtatgtgataccaaaagacagc
tttggtaggggtgacggttcgctggaggcaaggaaaggtgttggtagttctgctatattt
gtggcacggaaccggtttgctgtgcttgacaaaggcaacaaccaagttcttgtcaagaat
cttaaaaatgaagtggtgaaaaagagtggcctcccggtacctacggatgcaatcttttat
gctggaacaggtagcttgttgtgtaggtcagaggatagagtagtcatatttgatctccag
caatggcttgtccttggtgaccttcaaaccccttttgtgaaatatgttgcttggtctaat
gacatggaaagtgttgctttgctcagcaagcattccattatcattactaacaagaagctt
gtgcataagtgcactcttcatgagacaatacgtgttaaaagtggagcgtgggatgagaat
ggtgtttttatttacaccaccttaaaccatataaaatattgccttcccaatggagatagt
ggaataatccgtacgcttgagattcctatatacataactaaggtttcaggccatactata
ttttgcctggatcgtgatgggaagaataagagtgtcgttattgatgctacagaatacatt
ttcaagctctctctgcttcggaagcgatatgatcatgttatgaatatgataagaaactcc
cagctctgtggtgaggccatgattgcttatctgcaacagaaggggttccctgaagtggct
ctccattttgtcaaagatgagaaaacacgctttaatttggctttagagagtgggaacatt
caaattgctgttgcatcagctaaggagattgatgacaaagatcattggtataggttgggt
gtggaggcccttcgccaaggcaatgctgctatagtggaatatgcctaccagaggactaag
aactttgagagattgtcttttctttatctcataaatggtaacctggaaaagctatccaag
atgctgaaaattgcagaagttaagaatgatgctatgggtcagtttcacaatgctttgtac
cttggtgatatacaggaacgggttaagatcttggagaatgctggtcacttacctcttgct
tatattacagcatctgtccatggtctacaggatgttgctgaaaggttagcagctgagttg
ggagatgatgtccctcctttgccagtggataaaaatccttccctattgatacctccaacc
cctgttatgtgtggtggtgattggccccttctgagagtcatgaaaggcatatttgatggt
ggatttgatggtggcaggggtgctgtggatgaagaggaggagggtgcagaaggtgactgg
ggtgaagatcttgatgtggttgatggcttgcggattggggacgttagtgccattttggag
gatggagaagtggccgaagaaaatgaagagggtggatgggaccttgaagatttagaactc
cctgctgaggtagaaacccctaaggtttccggcaatggtcgttcttctatttttgtggca
ccaactcctggtatgcctgtaagtcagatttggattcagaggtcatctcttgctgctgaa
catgtagcagctggcaattttgacacagcaatgtgtttgctgagcaggcaactcggtata
aggaactttgctcctttgaaatccatgtttcttgatctttacactggcagtcatagctat
cttcatgcattaacatctgctccagtggtgcccctggcagttgagaggggatggagtgag
tctgctgctcctaatgttaggtgtccaccagcccttgtattcaatttttctcagttggat
gataagctgaaggctgggtacaaggccacaacggctggaaaattcactgaggctcttcgg
ctcttcctcagcattcttcatacggttccattgattgttgtggagtcagggagggaagtt
gatgaagtcaaggagttaattattattgccaaggagtatgtacttggtctgcagatggag
ctgaagcgaagagagatgaaagacaatccagtacgccagcaggagcttgctgcctacttc
acccactgcaaccttcaactgcctcacctcagacttgctctgctgaatgcaatgaccatc
tgctataaggctaagaacctggctacagcaggtaactttgcccggcgactattagaaaca
aaccccacaaatgagaatcaagcaaagacagcaagacaagtgctccaagccgcagagagg
aagatgacagatgcctctcagctgaactatgacttcagaaacccattcgtgacttgtggg
gcaacttatgtgccaatttaccggggacagaaggatgtatcctgcccatattgcactgct
cgcttcgtccctagccaggatgggcaattgtgtgctgtatgtgatatcgctgttgtcggg
gcagatgcatcaggactgctctgttctccttcacaaattcgcaatcaaattcgatga

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