Gossypium hirsutum (upland cotton): 107928073
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Entry
107928073 CDS
T04793
Name
(RefSeq) protein CHROMATIN REMODELING 35 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107928073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107928073
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107928073
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_16
Motif
Other DBs
NCBI-GeneID:
107928073
NCBI-ProteinID:
XP_016714716
UniProt:
A0A1U8LJD1
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Position
A12:complement(7620545..7628267)
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AA seq
903 aa
AA seq
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MEPPLPVLPTNYGISNEFCSKGCKRTRLSSDSKDYDSTISAANPQDGNEKKKPKVSPNAI
DFSDPLVYAKMLETFNTGGKYGSVTKDLEALISRNTQLVSKVLALHPRLSNMSADVEKTP
RKEASKVPSRQLSHLSRNNFIDLEDDSIGNDITSSVSPVVILDSDDEDNRNPRSLHPVQE
IVLRKPSGNLIYKEIKVGEPNLFQFGESMGYRVYKEEKVSLTSEFDIKKDKGIYVGVEDD
VDAQTENEDDGLGDIWQEMSMALEFSKDAIEDPSNEHMPEDDEDCDHSFVLKDDLGYVCR
ICGVIQRGIETIIDIQYNKAKKSTNAYALEPRNGKNRESIETGVKFSEDDLAVTDITAHP
RHMKQMKPHQVEGFNFLLSNLVADNPGGCILAHAPGSGKTFMIISFMQSFLAKCPHAKPL
VVLPKGILATWKKEFETWQVEDIPLLDFYTVKADNRSQQLDVLKKWVECKSILFLGYKQF
STIICDGGTSQTSISCREILLRAPSILILDEGHTPRNENTDVLQSLAKVQTARKVVLSGT
LYQNHVKEVFNILNLVRPKFLRLDTSKSVIKRIMSKVHIAGVKKQLKAGADAAFYDLVEH
TLQKDENFERKVSVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLSLGPRQKDEVHKL
RRFQRKFKISSVGSAVYLHPKLNSFSENSDTTDDKMDELLNTLDVREGVKAKIFLNMLNL
CESAGEKLLVFSQYLVPLKFLERLSVKVKGWQPGIQVFSITGESSSDHREWSMDRFNNSP
DAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVYAYRLVAG
DSPEEEDHSTCFKKELIAKMWFEWNKYCGNRDFDMETVNLNECNDLFLESQLLREDIRDL
YRR
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggagcctcccctgccggttttgcctacaaattatggaatctcaaacgaattctgttct
aaaggttgtaagaggacaagattatccagtgattcaaaagattatgacagcaccatctct
gctgcaaatcctcaagatggcaatgaaaagaaaaaacctaaggtctccccgaatgcaatt
gatttcagtgacccacttgtatatgctaaaatgcttgaaacttttaatactggtggtaaa
tatggaagtgttacaaaagatttagaagcccttatttctaggaatacacaattggtaagc
aaggtacttgctttgcatcctcgtctttcaaatatgtcggcagatgtggaaaagaccccg
aggaaagaggcttcaaaggtcccaagtcgacaactttcccatttgtcacgaaacaatttt
atcgacttggaggatgactctattggaaatgacatcacatcgtcggtgtcaccagtagtg
attctggattcagatgatgaagacaatagaaatcctagatctctacatccggtccaggaa
attgtattgaggaagccatctgggaatttaatctataaagagataaaggttggagagcct
aatttgtttcagtttggggagtctatgggctaccgagtttacaaggaagagaaggttagt
ctaaccagtgaatttgatatcaagaaggataaaggtatttatgttggtgttgaagacgat
gttgatgctcaaacggagaatgaagatgatggtctgggagatatttggcaggagatgtca
atggcattagaattctccaaggatgctattgaggatccttcaaacgagcacatgccagaa
gatgacgaagattgtgatcattcttttgtcttgaaggatgatcttggttatgtatgtaga
atttgcggggtcattcagagaggaattgagactataattgacatccaatataacaaggcc
aaaaagagcacaaatgcttatgcattagagcctcgaaatggcaaaaatagagagtcaatt
gaaactggagttaagttctctgaagatgatttagcagtaaccgacataactgcgcatcca
aggcatatgaagcaaatgaaacctcatcaagttgaaggctttaattttcttctgagcaat
ttggtggcagataaccctgggggctgcatcttggcacatgcccctggttctggaaaaaca
tttatgataatcagcttcatgcagagtttcctagccaaatgcccacatgctaaaccacta
gttgtgcttccaaaaggcatcttggctacatggaaaaaggagtttgaaacatggcaagta
gaggatattccactgcttgatttttatactgtgaaagcagataatagatctcagcaattg
gatgttttgaagaagtgggttgagtgcaaaagtatcctttttctgggatacaagcagttc
tctaccataatttgtgatggtggaaccagccagacttctatatcttgccgagagatactg
ctcagagcaccttcaattttaattttggatgaaggccacacaccgaggaatgagaacacc
gatgtgctacaatcccttgcaaaagtgcaaacagctcgaaaagtggtgctttcaggaact
ctttatcaaaatcatgttaaagaggtatttaacatattgaaccttgttcgaccaaagttt
cttaggttggatacttcaaaatcagtaattaagcggataatgagcaaggtgcatatagct
ggggtgaagaagcagttaaaagctggagcagatgcggctttttatgatttggtggagcac
acactgcagaaagatgaaaattttgagagaaaagtctcagtcatccatgatctgcgtgag
atgaccagcaaagttcttcattactataaaggtgatttcttggatgagcttcctggactt
gttgatttcactgttgtgctgagtcttggtcctagacagaaggatgaagttcacaagtta
agaaggtttcaaaggaaattcaagatttcatctgttggtagtgctgtttatctccatcca
aaacttaattctttctctgagaattctgacacaacagatgataagatggatgagctgtta
aacacattagatgttagagagggcgtcaaagcaaaaatttttcttaatatgttaaatttg
tgtgagtcagctggtgagaaactccttgtttttagtcagtatcttgtccccttgaaattt
ttagagagattatccgtgaaagtgaagggttggcaaccaggaattcaggttttctcgatc
acaggtgaatcaagctctgatcatagggagtggtctatggatcgcttcaataactctcct
gatgccaaagttttctttggatctataaaggcatgtggagagggaatttctttggtgggg
gcatcccgaattatcattttggatgtccatcttaatccatctgtgacccgccaagcaata
ggtcgtgcttttcgccctggccaaaagaagaaagtgtacgcgtatagattggttgcaggg
gattctcctgaggaggaggatcatagtacttgtttcaagaaggaattaattgcaaaaatg
tggtttgagtggaacaagtattgtggtaaccgagattttgatatggagactgttaatttg
aacgagtgcaatgatctctttttggaaagtcagttgttaagggaagacattagggatctg
tacagaaggtag
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