KEGG   Gossypium hirsutum (upland cotton): 107928093
Entry
107928093         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107928093
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107928093
Enzymes [BR:ghi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107928093
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     107928093
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 GMC_oxred_C
Other DBs
NCBI-GeneID: 107928093
NCBI-ProteinID: XP_016714729
UniProt: A0A1U8LNH6
LinkDB
Position
A06:complement(124222066..124237506)
AA seq 1969 aa
MEENSSSVILDGEIVGIKFCLASPKEILTASVSGFPINHVSQLSNSYLGLPLEFGKCSAC
GTSEPGQCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLL
SSCCENTPQVSIKEVKTTDGACYLELKQPSRQSKTNWNFLERYGFRYGDHHTRTLLPCEV
VEILKRIPAQTRRKLSGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSSDLSTSMLR
KVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVNKDAS
DSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVHMHNM
RYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK
HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVEKQLL
SSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKGNHVAPCWT
AFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKEVLNF
FDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELVELQM
ENHIRVAKAPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSKTLVE
DVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGLSEPG
TLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSARTRPQFPAGEPVGVLAATAMSN
PAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQENAAYL
VKNHLRRVKLKDIAVDFIIEYQQQQIVSEIEAGLVGHILLNKDLLKELSVSVQEIHMKCQ
ETINSFCKKKKTAETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTNDDNLDSAIQ
ILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGELALEVVLEKSAVK
QNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRLSTSVSMVTRG
VLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTPRKCFERAAEKCY
DDSLSSIVASCSWGKRVAVGTGSRFDLLWNQESGSDQMSGMDVYNFLHMVCGAGGSNSNT
ACLGEEVDDLMDEWCLSPDHSTGLDKPVFEDAAEFENNLDGQSASANWEKDVSLDKVSDV
GWDASGWNKNVEDVDKFAAAATSSEKQNEWSGWGASKSNSQVVSPKVDVGWDALSGWNKN
AEEGDKFAAAATSSKKKNECSDWGARKSKSQDVVSPKVDVGWDALSAWNKNAEDGDNFAA
AASSSKKQSEWSDWGMSKSKSQDVSSKTDGTCMKEKTELSGWGMKKFDTRDVLPVEERAS
KPNGWDSGASWGIMSKESEELDASAAAPWSGWGTKDSTPKKSLDETSKSSSWDTVSSWGK
KIAAVHESGFTGNDNQPDQGRIENEWDNKASHVKPVQSASGWNNKVTEEKVVQPTSSWDE
KASWEKPVQSMSGWVSSSVAGSDESPTKGWSKNSAWDQQKSQTMNNAWDQQKSPATNSSW
DRQKSSTANNSWDQQKPPANSSWDQEKSPTMNNSWDQQKSPECSQGWGTLNDLNQPASSS
GWDMPQGEDNTQNEKQHQWGQSKGSRRWASDANKKNRPVKPARMMNDDSSMAAMYTVTRQ
RLDMFTSEEKDILSDVEPLMQSIRKIMHQTGYNDGDPLSADDQTFVLDNVLAHHPDKAVK
MGAGIDYVMVNKHSLFLDTRCLYVVTTDGHKQDFSYLKCLENMIKGKYPDLAEAFVAKYF
RKSRGNRERGVAPENSQGNRDQSVTQDDNSQGNRDQSVAQDDNEGEVKQ
NT seq 5910 nt   +upstreamnt  +downstreamnt
atggaggaaaattcttcgtcagttattttagatggtgagatagttggtataaagttctgt
ttggcaagccctaaagaaattcttacagcatcagtcagtggctttcctattaaccatgtt
agtcaactctcgaattcctaccttggtttgcccctcgaatttggtaaatgtagtgcatgt
ggtacatcagaacctggacaatgtgaaggtcattttggatatattgaattaccaattcca
atataccatcctagccatatcagtgaattaaagcgactgttgagtttgctttgcttgaag
tgcctaaaattgaagaacaagtttcagatgaaaagtggcagtgtcgctgaaagattgcta
tcgtcctgttgtgagaatactccacaagtttcaatcaaagaggttaagacaacagatggt
gcttgttatttggagttgaagcagccatctagacaatcaaaaactaactggaatttttta
gagagatatggttttcgctatggtgatcatcatactcgaactcttctgccttgtgaggtg
gtggaaatactcaagagaattcctgcacagacaagacggaaactttctgggaaagggttc
ttcccacaagagggatatattttgcagtatttgcctgttcccccaaattgtttatctgtc
ccggacgtttcggacggcgttagcgtcatgtcctcggatctttctacatcaatgctgaga
aaggttctgaagcaagttgagatcatcaaaagttcaaggtctggtaccccaaattttgaa
tcgcatgaagtagaagctaacgatttgcaatcagcagttgagcaatatcttcaagttagg
ggtactgttaaagcatcccgcagcatagatgcacgatacggggttaacaaagatgctagt
gattcgtcaacgaaagcatggctagagaaaatgagaacactgtttattagaaagggttca
gggttttcttcacgcagtgtgattactggtgatccatacaaaaaggtgaatgagattggt
attccatctgaaattgctcagagaattactttcgaggaaagggttcacatgcacaacatg
agatatttgcaaaatctggtggataacaagttgtgtttgacctacagagatggtggttct
acatattcattgagggaggggtcaaaggggcatacgtttttgagacctggtcaggtggta
cataggcgaattatggatggagatattgttttcataaataggccaccgacgacacataag
cattcattgcaggcactttcagtatatgtacatgatgatcatacagtgaagataaatccc
ctaatttgtgggccattaagtgctgattttgatggagattgtattcacttgttctatccg
cagtctttatcagcaaaagcagaggtttatgagctcttttcagtggagaagcagttgctt
agctcccatagtggcaacctaaatttgcagttggcgactgattcattgttgtcactcaga
gttatgcttaagacatttttgtttaaaaaggcagatgctcaacaattgtctatgtttctc
tcttcagctttgccagaacctgcttttttaaagggtaatcatgttgctccatgttggaca
gccttccaaattctgcagaccgcttttcctgcatgcctagattgctccagtgatagatac
ttaattggaaaaagtgatatattgaaagttgatttcaataaggaccttatgcagtctgtc
atcaatgaagttgtggcatctattttctatgagaagggtccaaaagaggttcttaacttc
tttgattctttacaacctttattgatggagaatatttttgcagagggcttcactgtttgt
ctagaagatttttccgtctccagggaagttatagaaaatattcagaaggatattcaggtt
atatctcccctgctttatcagttaaggtcaacttataatgaattggttgagttgcaaatg
gagaatcacattcgagtagccaaagcgccaatagctgatttcatactaaaaacatcctct
ttgggtaatttaattgactctaggagtgattctgctgtcaataaggttgttcagcagatt
ggattcctgggaatgcaactttctgataaaggaaaattctactcaaagactttggttgaa
gatgtggctcaccaatttcaaagcatatatccttcagatgcaatcgattatccttctgct
gagtttggactgattaaaagttgctttttccgtgggcttgatccgtatgagggcattgta
cattcaatatctacaagagaagtaatggttcgctctactagaggattgtctgaacctggg
accttgtttaagaatttgatggccatccttcgtgatgttgttatttgttatgatggcaca
gttagaaatgtcagtagcaattcaataatacaatttcaatatgggctaagtgctagaact
agacctcaattccccgctggtgaacctgtgggtgtcttagctgctactgcaatgtcaaat
ccagcatataaagcagttcttgattcatctcctagtagcaattcttcttgggaactgatg
aaggaaatattgctttgcaaagtaagtttcaaaaatgacccaattgaccgccgtgtaatt
ctgtatttgaaagattgtgattgtgggagaaagtattgccaagaaaatgcagcatatctt
gttaagaatcatttgagaagagtcaaacttaaagatattgcagtagatttcatcattgaa
taccagcagcagcaaattgtgtcagaaatagaggcaggccttgttgggcatatccttctc
aataaggatcttttgaaggagttgagtgttagtgtgcaagagattcatatgaagtgccaa
gaaactattaactccttttgtaagaagaaaaaaactgctgaaacttttaagaggacagat
ttgtttgtcagtgaaagttgttccattcagcaatcctgtgtggacaaatggcttgacatg
ccatgcttgatgttcttttttcgaaatacaaatgatgataatctagatagtgcgatacaa
atcctggctgacatcatctaccctgttcttctacaaacagtgatcaagggtgaccctcgt
atctgttcagcaaaaattatctgggttaaccctgatgcaacaacttggataagaaatcca
agtaagactcagaagggtgaattggctttggaagttgttttggagaaatctgctgtgaag
cagaacggtgatgcctggaggactgtcatcgattgttgtcttccagtgctaaatataatt
gacacccataggtctataccttatgccataaagcaagttgagcaactgctcggaatttct
tgtgcttttgaacaagcagtgcagcgtctctccacttctgtgtcaatggtgacaagaggt
gttctaaaggaacacctcatgctcttagctaacagcatgacatgttgtggaaatttaatt
ggcttcaactctggtggttataagacactatctcgctcattgaatattcaagtgccattt
actgaggcaacactgtttacaccaagaaagtgctttgaaagggctgctgagaaatgctat
gacgattccttgtcgagcatagttgcatcctgttcttggggtaaacgtgtggctgttgga
acaggatcacggtttgacctcctgtggaatcaggagtctggatctgatcaaatgagtgga
atggatgtgtacaactttctgcacatggtttgtggtgctggtggaagcaattctaatact
gcttgcctgggagaagaagttgatgatttaatggatgagtggtgcttgtctccagaccat
agcactggtttagataagccggtgtttgaggacgcagctgaatttgagaataatttagac
ggtcagtcagctagtgcaaattgggaaaaagatgtgtctttggacaaggtgtcagatgtt
ggttgggatgcatctggatggaataaaaatgttgaggatgttgacaaatttgctgcagct
gcgaccagttcggagaagcaaaatgagtggtctggttggggtgcgagcaaatctaactct
caagttgtctctccaaaagtggatgttggttgggatgctttgtctggatggaataaaaat
gcggaggaaggtgacaaatttgcagctgctgcaaccagttcgaagaagaaaaatgagtgt
tctgattggggggcgaggaaatctaaatcacaagatgttgtctctccaaaagtggatgtt
ggttgggatgccttgtctgcatggaataaaaatgcagaggatggtgacaattttgcagca
gctgcatccagttcaaagaagcaaagcgagtggtctgattgggggatgagcaaatctaaa
tcacaagatgtctcttcaaaaacggatggaacttgtatgaaagagaaaactgaattgtct
ggttgggggatgaaaaagtttgatacacgagatgtccttcctgtggaagagagagcctcc
aagcccaatggttgggattctggtgctagttggggaataatgagcaaagaatctgaagaa
cttgatgctagtgctgcagcgccatggtctggttgggggacaaaagattccacccctaaa
aaatctttggacgaaacttccaaatctagtagctgggatactgtttcttcttggggaaag
aagattgctgcagttcatgaatctggcttcactggaaatgataaccagccggaccaaggg
agaattgaaaatgaatgggataataaagcaagtcatgtaaagccggtgcagtcagcatct
ggttggaataacaaagtgacagaggaaaaggtagttcaaccgacatctagttgggatgaa
aaagcttcttgggaaaagccagttcagtcaatgtctggttgggtttcctcatctgttgca
ggctcagatgagtcacctacaaaaggctggagtaagaatagtgcttgggaccaacaaaag
tcacagacaatgaataatgcttgggaccaacaaaagtcacctgcaacaaatagttcctgg
gatcggcaaaaatcatctacggcaaataattcttgggaccagcaaaagccaccagcaaat
agttcttgggaccaagaaaagtcacctacaatgaataattcatgggaccaacaaaagtca
cctgaatgttcacagggttggggcacccttaatgacttaaaccaacctgcaagttctagt
ggctgggatatgccacagggtgaggataacactcaaaatgaaaaacagcatcagtgggga
cagagtaagggctcacgtcgttgggcttcagatgctaataagaagaatcgtcctgtgaag
ccagctcgaatgatgaatgatgattccagtatggctgcaatgtacactgttacaagacaa
agactagacatgtttacttctgaggagaaagatattctgtcggatgttgagccactcatg
cagtcaatcagaaaaataatgcaccagactgggtacaacgatggggatccgctgtctgcc
gatgatcagacgtttgttcttgataatgttttagctcatcatccagacaaagctgtaaaa
atgggtgctggtattgattatgtcatggtaaacaagcacagccttttcctggataccagg
tgcctctatgttgtcacaaccgatggtcataagcaagatttctcttatctcaagtgtctg
gagaacatgatcaaggggaaatatcctgatttggctgaagcttttgttgcaaaatatttc
cgaaaatctcgagggaaccgtgagcgaggtgttgctccagagaattctcaagggaaccgc
gaccaaagtgttactcaagatgataactctcaagggaaccgtgaccaaagtgttgctcaa
gacgataatgagggggaggttaagcagtag

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