Gossypium hirsutum (upland cotton): 107928336
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Entry
107928336 CDS
T04793
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107928336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107928336
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
107928336
SWR1 complex
107928336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
HDA2-3
Motif
Other DBs
NCBI-GeneID:
107928336
NCBI-ProteinID:
XP_016715012
UniProt:
A0A1U8LKA3
LinkDB
All DBs
Position
A08:125017716..125036416
Genome browser
AA seq
2043 aa
AA seq
DB search
MASKGLRPKLEHETKARRQKALEAHKEPQRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
KKVALRASKGMLDQATRGEKKLKEEEQRLRKVALNISKDVKKFWMKIEKLVLYKHQMELD
EKKKKTLDKQLEFLLGQTERYSTMLAENLVDPYKPVQQHPAQNQMNSPGKADMNEIDEPL
DLNADADEDFSIHSDQESEDDEQTLEDDEALITAEERQEELAALHSEIDLPLEELLKRYA
GETADGEGSPDNREDRHECTSGQDDSSKGNGSLISPSTPSSKVETTNLLVRRSKESNGGL
SKSENYSSDIEASSPRNLSQSSGELPKDVSYDFSDEQEDGDFTLTGEETVHHMDDETTLL
EEEELAKADSSNSIDEIALLQKESEIPVEELLRRYKKDFSADDTSGDESDYASAFSEDIL
DSSTMHQNVEAKEEGVSKDENLESSAPEGVEHPPAEKEAASPDRKSENGMESENRIADAA
AAARSAQPTGNTFLTTNVRTKFPFLLKHPLREYQHIGLDWLVTMYEKRLNGILADEMGLG
KTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLRWCPAFKILTYFGSAKERKLK
RQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK
RRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMIEGQERVNKEVVDR
LHNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSRRQRNLYEDFIASSETQATLASANFF
GMISVIMQLRKVCNHPDLFEGRPIVSSFDMGGINIQLSSSVCSIVSPGPFSTVDLKGLGI
LFTDIDFSMTSWESDEVEALVTPKSLIEERVDQDNLEEIRPLSRHKGNLHGTNIFEEIRK
ALREERLREAKERAAAIAWWNSLRCRKKPVYSTTLCELVSVKHPAFDIHRKKVDNRSYLY
SSKLAEIVLSPVERFQTMIHLVESFMFAIPAARAPAPVCWCSKTGTSVFLHPTFVEKCAE
NLFALLTPIRPAIVRRQVYFPDKRLIQFDCGKLQELEILLRRLKSEGHRALIFTQMTKML
DILEAFINIYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADT
VIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ
SGGYNTEFFKKLDPMELFSGHRTLSVKSQKEKNLNSGIKDSVSNADVEAALKYAEDEADY
MALKKVEQEEAVDNQEFTEEAMSKVEDDEFANEDDMKADESTDQAGCMITSNKDDGLILN
GSGSIEDKALILASKEDDVDMLADVKKMAAAAAAEGQAIPLLENQLRPIDRYAIRFLEVW
DPIIDKGETEPEIGFEEAEWELDQIEKYKEEMEAEIDDDEEPLVYEKWDADFATEAYRQQ
VALAQHQLMEELEHEAKEKEEADEANFDAMNEMTSEPKAKSKKKKKPKKAKFKSLKKGSL
NSEVKPAKQGTKAEPIFIDDDVDSPEELSYSDITPPSSNMQKKRKKIEIVHDSEEAKSSK
KPKKLKKPSELHPGECVEVKPCESLSVELEQKPASRSKTGGKFSITSMPMKRVLMIKPEK
LKKGNIWSKDCVPSPDSWLAQEDAILCAVVHEYGPNWSLVSDTLYSMTAGGFYRGRYRHP
VHCCERFRELIQRHVFAAPDSLGNEKISYAGSGKALLKVTEDNIRMLLNFAATQPDHELL
LQKHFTFLLSSVWRVTHHPEHRQNVSSARNGVRLGGRFLSPFLGHTPQRSAQEAAQRMKF
TNLRECSKLLSAALHDASNRQWSEAGFLSDKEDSQVIEESLEITLEIQRENDDSMIPFPR
VMNLSVYGPNPATSINKIAGEDHLKASSVLAENRFRAAAMAGVEGGQHWASAAFPANDSK
TRSGSKLQSLGKHKLPASDTARPKSKLKKASTEHSDVPNLHAVQVFQTVSTIASKDPNLI
CDPTLVTNDGSWTNGVGSNFCSSMDEAFPSEVESLDIVPHNYTPGFISGLDDCSMLPDYT
EIG
NT seq
6132 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaaaggactgaggcctaagcttgagcatgagacaaaagctaggcgccagaag
gctcttgaagcgcataaagagcctcaacgtcctaaaactcactgggatcatgttttagag
gaaatggtttggttgtcgaaggactttgagtcagagaggaaatggaaattggctcaggca
aagaaggttgccttaagagccagcaagggcatgttggatcaggccaccaggggagaaaag
aagttgaaggaggaggaacagcggttgcggaaagttgcacttaatatttcgaaggacgtg
aagaaattctggatgaaaatagagaaactggtgctttacaagcatcagatggagcttgat
gagaaaaagaaaaagacacttgataaacaacttgaatttcttttagggcaaactgagagg
tactcaacaatgttggcagaaaatttagtggacccatacaaacctgtgcaacaacatcct
gctcaaaatcaaatgaactcgcctggtaaagcagatatgaatgagattgatgaacccttg
gacttgaatgctgatgctgatgaagattttagcatacactctgatcaagaatcagaagat
gatgagcaaacactggaggatgatgaggctcttataactgctgaagaaagacaagaagaa
ttggcagctttgcacagtgaaatagatcttccacttgaggagctccttaagcgatatgct
ggggaaacagctgatggagaaggtagtccggataatagggaggacagacatgagtgtaca
tcagggcaagatgatagtagtaaaggcaatggaagccttatttctccttccactccttcc
agtaaagttgagacaaccaacttgcttgttcgtcgttctaaagaaagcaatggtggcttg
tccaagtcagaaaactactcatcagatattgaggcatcctcccccagaaatctgtcacaa
agctctggggagctaccgaaagatgtttcatatgatttcagtgacgagcaggaggatggt
gattttacccttactggagaagagacagtacatcatatggatgatgagacaacactgttg
gaggaggaggaactagcaaaagcagattctagcaattccatagatgagattgccttactg
caaaaggagagtgaaattcctgtggaagaattgcttcgaaggtataaaaaggacttcagt
gctgatgatacgtctggagatgaatcggactatgcctcagctttttcagaggacatcttg
gattcttccacaatgcatcaaaatgttgaagctaaggaggagggtgtttctaaggatgaa
aatcttgaatccagtgctcccgagggagttgaacatcctcccgcagaaaaggaagcagca
agccctgatagaaagtcagaaaatggaatggaaagtgagaatagaattgctgatgctgct
gctgctgcgagatcagcacaaccaactggcaatacattcttaactactaatgttcgtaca
aagttcccttttcttctcaaacacccccttcgcgaatatcagcatattggcttggactgg
cttgttactatgtatgagaaaaggttaaatggaatactagctgatgaaatggggcttgga
aagacaatcatgacaattgctcttcttgcacatctagcttgtgaaaagggaatatggggt
cctcatctcattgtggttcctacaagtgtcatgcttaactgggaaactgagtttcttaga
tggtgtcctgccttcaaaatcctgacatactttggaagtgccaaagagcgcaaattgaag
aggcaaggctggttgaaaccaaactcatttcatgtatgcataactacttacagactggtt
atacaggattccaaggtcttcaaacgaaagaaatggaaatacttgatcttggatgaagct
catcttattaaaaattggaaatcccaaagatggcaaactcttttgaacttcaattcaaaa
cggcgtatcttgttgaccggtacacctctgcagaatgatctcatggaactgtggtcacta
atgcattttctaatgccccacatttttcagtctcatcaagaattcaaagattggttttgt
aatcctatatcgggcatgatagaaggacaagaaagagttaacaaagaggttgttgatcgt
ttgcataatgtcctccgcccttttatactgcgccgattaaaaagggatgtcgaaaagcag
cttccaatgaaacatgagcatgtcatatattgtaggctctcaagacggcagcgtaacttg
tatgaagacttcattgccagctctgagacacaagccactcttgctagtgccaattttttt
gggatgatcagtgttatcatgcaactgcgaaaagtctgtaatcatcccgacttatttgag
ggacgaccaattgtgagttcttttgatatgggtggtattaatatccagttgagtagttct
gtatgttcaattgtttcacctggtccattttcaactgtagatcttaagggtttgggaatt
ttatttactgatatcgattttagcatgacgtcttgggagagtgatgaagtagaagctctg
gttactccgaaaagtttaatagaagaacgtgttgaccaggataatcttgaggaaattagg
cccttgtctagacataaggggaacttgcacgggacaaatatatttgaagagattagaaag
gctttaagagaagagaggctaagagaagcaaaagaacgagcagcagcaattgcttggtgg
aattctttgagatgccggaaaaaaccagtttactcgacaacattatgtgaactggtatct
gtgaagcaccctgcatttgatattcaccgtaaaaaggttgacaaccgatcctacttgtac
tcctctaagcttgctgagattgttctttctccagttgaacgcttccagacaatgattcat
ctggttgagtccttcatgtttgcaatcccagcagcacgggccccagctcctgtttgttgg
tgcagcaaaacaggaacttctgtgttcctgcatccaacatttgtagaaaaatgtgctgaa
aacttgtttgcccttctaacaccaattaggcctgcaattgtccgtaggcaggtatatttt
ccagataagcgattgatacagttcgactgtggtaagctacaagagcttgagattttgcta
cgaagattgaagtctgaaggtcatcgggcattaatatttacccaaatgaccaagatgctt
gacatattggaggctttcataaatatatatggatatacttacatgcggctggatgggtcc
actcaacctgaggagaggcaaacattaatgcaacgattcaacactaatcctaaaattttt
cttttcatcttatcaacccgtagtggaggagttggtattaaccttgttggggctgataca
gttatattttatgatagtgattggaatcctgccatggatcagcaagctcaagatcgctgc
catcgaataggacagacacgtgaagtgcatatctatcgtctaatcagtgaaagcaccatt
gaagaaaatattttgaagaaagcaaatcagaagcgtgcccttgatgacctagttatacag
agtggagggtacaatactgaattttttaagaagcttgatcccatggaattgttttcgggt
cataggactctttctgttaagagtcagaaagagaaaaatctcaacagtggcatcaaggac
tctgtatctaatgctgatgtagaagctgctttgaagtatgctgaagatgaagcagattac
atggcattgaagaaagttgaacaggaagaggctgttgacaatcaggagtttacagaggaa
gccatgagcaaggtggaagatgatgagtttgcaaatgaggatgacatgaaggctgatgag
tcaactgatcaggctggatgtatgatcacttcaaataaagatgacgggctaatattgaat
ggcagtggttctattgaagacaaagctcttattcttgctagcaaagaagatgatgttgat
atgctggctgacgtgaagaagatggctgctgctgctgcagcagaaggacaagctatccca
ttgcttgagaatcagttgagaccaattgatcgatatgcaatccgttttctggaagtatgg
gatcccattatagacaaaggagaaacggaacctgaaattgggttcgaagaggcagaatgg
gaacttgatcaaattgagaagtacaaggaggaaatggaagctgagattgatgatgatgag
gaacctctagtgtatgagaaatgggatgctgattttgccacagaagcttatcggcagcaa
gttgctttggctcaacatcagttaatggaagaactagaacatgaagccaaggagaaggaa
gaggcagacgaagcaaattttgacgcaatgaatgaaatgactagtgaacctaaggcaaaa
tctaagaagaagaagaagccgaagaaagcaaagtttaaatctctgaagaagggatcttta
aattctgaagtgaaacctgcaaaacagggcacaaaagcagaacctatattcatagatgac
gatgtcgactcgccagaagagctctcttattctgatattacaccaccctcttcaaatatg
cagaaaaagcgtaagaagattgagatagtgcatgatagtgaagaagcgaagagctcaaag
aagcccaaaaaacttaagaagccttctgagctacatcctggtgaatgtgtggaggtaaaa
ccatgtgagagcctttctgttgagcttgagcagaaacctgctagtaggagcaaaactgga
ggcaaattttccattacatccatgcccatgaaacgagtcttaatgataaaacctgagaaa
ttaaagaagggtaatatctggtctaaggactgtgttccatctcctgattcttggttggca
caggaggatgctattttatgtgcagttgtgcatgaatatggcccaaattggagtttggtt
agtgacacactctacagcatgactgctggtggcttttacaggggtagataccgccatcca
gttcattgttgtgagaggttcagggaactaattcaaagacatgtttttgctgcaccggac
agtttgggtaatgaaaagatcagctatgcaggctctgggaaggctcttcttaaagtaaca
gaggataacattcgaatgctgttaaactttgccgctacacagccagatcatgagttgctt
cttcagaagcacttcactttcttactttcatctgtgtggagggtgacgcatcatcctgaa
catcgacaaaatgtttcatctgctcggaatggtgttcgtttagggggaaggtttctcagt
ccttttcttggccacacacctcagcgttctgcacaggaagcagcacagaggatgaaattc
acaaacttgcgggagtgtagcaagttgttatcagctgcattgcatgatgcgagcaataga
caatggagtgaagcaggtttcctctctgacaaagaagattctcaggtgattgaagaaagt
ttagagataacactagaaatccagagggagaatgatgactctatgattccattcccacgg
gtaatgaatttatcagtatatggccccaatcctgctacatctataaacaagattgctgga
gaagaccatctcaaagcttctagtgttttggccgagaaccgtttcagggctgcagctatg
gctggtgtcgaaggtggtcagcattgggcttcagctgccttcccagctaatgattccaaa
acacggtcagggtcgaaattgcagtccttggggaagcacaaactgcctgcatcagacaca
gccagacctaaatcaaaactgaagaaggcctcaacggagcatagtgatgtacctaactta
catgccgtgcaagtatttcaaacagtatcaacaattgcatcaaaagaccccaacttaata
tgtgacccaacattggtcactaatgacggcagttggaccaatggtgttggcagcaatttc
tgttcaagcatggatgaagcctttccatcggaagtagagagccttgatatagtcccgcac
aattatacccctggctttatttcgggactcgacgattgttcaatgctcccagactatact
gaaattggataa
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