Gossypium hirsutum (upland cotton): 107928350
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Entry
107928350 CDS
T04793
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107928350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107928350
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107928350
mRNA degradation factors
5'-3' decay
Decapping complex
107928350
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
107928350
NCBI-ProteinID:
XP_016715037
UniProt:
A0A1U8LKC5
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All DBs
Position
D08:complement(67601160..67608069)
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AA seq
763 aa
AA seq
DB search
MDASENLKQIGDTSTGGAVFDASQYAFFGNDVLEEVELGGLDEEEDLPAVGLDEEEFLFD
GEELNTTINGPRGSGIVGDRGSREGSSVAEWAHGEELPYWLGQQALETESVPRDKHWSSQ
LSPNLDSKHLYRTSSYPEQQQKQHFSSEPILVPNSSYNKPYPPPGGRSHQASPNLNSGHL
NNPYMVGGSQMAPSPNLSGFSSSQFQMPHLHQGLNYGRNMPDFAPVLSGNSLPSNQWGSQ
PKLHGGDNSSVLTNMLEQQLPHQNGLITSQLRPQLQAHQQRLQHPVQPSFSHLSGVQSQL
VNPHRSPSPPLMNKFEAILGIGDLRDQRPKSAQKSRYSQPGFDSSGMKSDIGWPKFRSKY
MSTDEIEGILRMQLAATHSNDPYVDDYYHQACLARKSAGATLRHHFCPTHLRDLPSRARA
NAEPHAFLQVDALGRVPFSSVRRPRPLLEVDPPNSSFVTNNDQKASDMPLELEPMLAARV
TIEDGLCLLLDVDDIDRLLKFNQLQDGGAQLRRRRQVLLEELAASLQLDDPLAKNGHTDE
LAQKDDLVFLQIVALPKGRKLLARYLRLLFPGDEPMRIVCMAIFRHLRFLFGGLLTDPGA
ETTDNLSKVISSCVHGMDLRALSVCLAAVVCSSEQPPLRPLGNPSGDWASLILKSVLDRA
TKLMIDFRAAGNYNMANQSLWRASFNEFFNLLTKYCINKYDTVMQSLRMQVKPNMAIDES
DVTKAIKREMPVDLLHACLPHINDQQKKLILDLSQRSLVVGQS
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggacgcttctgagaatcttaagcaaattggcgatacttctacaggaggtgcagtattt
gatgcatcacaatatgcgtttttcggaaatgatgttcttgaggaagttgaattgggggga
ttagatgaggaggaggatttacccgcagttggacttgatgaagaggagtttttatttgat
ggagaagagttgaacacaaccatcaatggaccaagaggctcagggattgttggtgacagg
ggatctagagaaggttcatctgttgctgaatgggcacatggggaggaattaccttattgg
cttggtcagcaggctcttgaaactgaaagtgttcccagagacaagcactggtcatcacaa
ctgtcacccaatttggactcaaagcatctctacaggacatcctcataccctgagcagcag
caaaagcaacatttttctagtgaaccaattctagttccaaattcttcttataacaagcca
taccctccgcctggtggcagatcccatcaagcttcaccaaacctaaattctggtcacttg
aataatccatatatggttggtggatcacaaatggcaccttcaccaaatctctctggcttc
tctagttctcagtttcaaatgccacatttacatcaggggttaaattatggcaggaatatg
cccgactttgctcctgttctttctggcaatagtttgccatcaaatcaatgggggagccag
ccaaaattgcatggtggagataattccagtgttttgaccaatatgttggaacaacagtta
cctcatcaaaatggtttgattacatcacaattaaggccacagctgcaggcacaccagcag
aggctgcagcaccctgttcagccatcatttagccatttatcaggggttcaatctcaactg
gttaatcctcatcgttctccatcaccacctctaatgaacaaatttgaagctatacttggt
attggtgatctgagagatcaaagaccaaaatcagctcaaaaaagtaggtattctcagccg
ggctttgatagcagtggaatgaagagtgatattggatggcctaaatttagatccaaatac
atgtcaactgatgagattgagggcattcttagaatgcagctcgctgcaactcacagtaat
gatccttatgtggatgattattaccaccaagcttgtcttgcaagaaaatctgctggggca
acattgagacatcatttttgtccaactcatctcagggatcttccttcccgagcacgtgca
aatgctgagccacacgcttttctccaagttgatgctcttgggagggtacctttctcttca
gttcgcaggcctcgccctcttcttgaagttgaccctccaaattcttcctttgtcaccaac
aatgatcagaaagcttctgatatgccccttgaactggaaccaatgcttgctgctagagtt
acaatagaggatggtctatgccttcttcttgatgtagatgatattgatcggttattgaag
tttaatcagttgcaggatggtggagcccagctgagacgaagacgacaggttttgttggaa
gagctggctgcatcacttcaattggatgacccacttgccaagaatggccacacagatgaa
cttgctcaaaaggatgatcttgtgtttttacagatagttgccctccccaaaggccggaag
ttgcttgcaaggtaccttcggcttctttttccaggtgatgagcctatgcgaattgtctgc
atggccattttccgtcatttaagattcttgtttggaggccttctgactgatccaggagcg
gaaactactgataacctttcgaaggttatttcctcatgtgttcatggcatggatcttcgt
gcacttagtgtctgtcttgcagctgtggtttgttcttcagagcagccccctcttcgccct
cttggaaatcccagtggagattgggcatctcttattctgaagtctgttcttgatagggca
acaaaactcatgattgattttagagctgctggcaattacaatatggccaatcaatctctt
tggagggcctcgttcaacgaattctttaaccttcttaccaagtattgcataaacaaatat
gatactgtgatgcagtccttgcgtatgcaggtcaaaccaaatatggccatcgatgaatca
gatgttacaaaagcaattaaaagagaaatgccagttgatcttttacatgcatgtttaccc
cacatcaacgaccagcagaaaaagctgatattggatctctctcagcggtctttggttgta
ggacagtcatga
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