KEGG   Gossypium hirsutum (upland cotton): 107928456
Entry
107928456         CDS       T04793                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD5B-like
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107928456
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    107928456
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HIRAN zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX zf-C3HC4_2 zf-RING_2 DEAD zf-C3HC4_4 Prok-RING_4 ResIII zf-RING_5 RING_XB3-XBAT31 zf-RING_4
Other DBs
NCBI-GeneID: 107928456
NCBI-ProteinID: XP_016715186
UniProt: A0A1U8LKR1
LinkDB
Position
A09:complement(83237544..83243002)
AA seq 1112 aa
MKAMDIDTVEDKKIQEIQSSMDSNVVSVVKLLPKDPDSNLHANTVGRIVTATGFRVSTLI
GSGDQFGESEPVQAIVKEEPLLRVKEEPDLGFDSDASMKEDKVIKVKEEPRLGFGNGVRV
KEEMGFNQTEEAVAQKEDSGPMDTFEEFLLLQNSKVQSLNESHNTQIKKKASETAELKSN
NQNPPCVKKEPDFECSQKRVDVKKEVSQERKVNGALVEDEDFPEDRDWYLVGRTIVNAVS
TTKGKNKLLDNEIVYFTFPSPVASYKLQSIVRFSTKRCGEIGRLPMDWAKWVNPLVYSNK
VKVLGRCIAAPTTLSIMQEVMLFVSFYIHSSVFTMGDKSSLMFDAPWNMESMLSPLLNLF
RYLKIKPYQKADFTPEELNSGKRVLHIQEDGYSEVTAALPAAKRRRGCQEQNKDEQDISE
ASLNKIVGAADTYDLEEMEPPHTLMCKLRPYQKQALYWMSGWEKGIDAEKAAQTLHPCWS
AYRICDERASTIYVNVFSGEATIQFPSARQMARGGILADAMGLGKTVMTIALILSRLGRG
NPDNEKPDSRKANGSITTNKKRDTYGNAPRRAKGGTLIICPMALLSQWKDELETHSRPET
ISIFVHYGGDRTNDPRVISEHDVVLTTYGVLTAAYKSDAGNSIYHSVDWYRVVLDEAHTI
KSSKTLGAQACFALSAHCRWCLTGTPLQNNLEDLYSLLCFLHVEPWCNWAWWKTKIQGPY
ENGNPTGLKWIKAILRLLMLRRTKETKDKEGRPILVLPPTDIQVIECEQSEAERDFYDAL
FKRSKVQFDQFVAQGRVLHNYASILELLLRLRQCCNHPFLVMSRADSQQYSDLNKLARRF
LEAHPGSVTLNQNAPTKAYIEEVVDGIRRGENXQCPICMESADDPVLTPCAHRMCRECLL
SSWRIPTLGSCPICRTLLKKTDLITCPTENKFRVDIDKNWKESSKVSKLLDCLERSRRSG
SGEKSIVFSQWTSFLDLLEIPLKRKGIGFLRFDGKLAQKQRERVLKEFNDTREKLVLLMS
LKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVTVRRFIVKETVEERMQ
QVQARKEKMIAGALTDEEVRSARIEELKMLFR
NT seq 3339 nt   +upstreamnt  +downstreamnt
atgaaagccatggatatagacacagtagaagataagaagattcaagaaatccaatcatcc
atggatagcaacgttgtttccgtcgttaagttgctccctaaagatcctgattcaaacctt
catgcaaataccgttggtcgaattgtaactgcgaccgggtttcgtgtttctaccctgata
ggctcaggtgatcagtttggagaatctgaaccagttcaggccatagtaaaggaggagcct
cttttgagagtgaaggaagagcctgatttggggtttgacagtgacgcttccatgaaagaa
gataaggtgattaaagtgaaagaggagcctcgtttggggtttgggaatggagttcgagtg
aaggaagaaatgggttttaatcagacagaggaagcagtagcccagaaggaagattcaggg
ccaatggatacttttgaagagtttctcctgttacaaaactcaaaggttcaatctcttaat
gagtctcacaatacccagataaaaaaaaaggccagtgaaactgctgagttaaaatctaac
aatcaaaaccctccatgcgtgaaaaaggaacctgattttgagtgttcacaaaaacgggtc
gatgtaaagaaagaggtttctcaagagaggaaagtgaatggtgctttagtagaagatgag
gattttcctgaagaccgagattggtatttagttggaagaacaatagttaatgctgtttca
acaactaaagggaagaacaaattgttggacaatgagattgtttacttcactttcccttct
ccagtagccagttacaagcttcaatccattgttcgattctccactaaacgttgtggagag
attggtcggcttccaatggattgggcaaaatgggtgaatcctcttgtatattctaacaag
gttaaagttcttggtcggtgtatagctgctcctacaacacttagtatcatgcaagaagtc
atgttatttgtaagcttttacattcacagttcagtatttacaatgggtgataaatcttcc
ttgatgtttgatgcaccttggaacatggagtctatgcttagtcctttgcttaatctattt
agataccttaaaataaaaccatatcagaaggccgacttcactccggaagaacttaattct
gggaaacgtgttctccatatccaagaagatggttacagtgaagttacagcggctttgcct
gcagcaaaacgaagaaggggttgtcaggagcagaataaagatgaacaagatatttcagag
gcatctttgaataagattgttggcgctgcagacacatacgatttggaggaaatggagccc
ccacatacactcatgtgcaagttgaggccgtatcagaagcaagctctttactggatgtcc
gggtgggagaaaggaattgatgctgagaaagctgcacaaactcttcatccatgctggtct
gcatatcgcatatgcgatgaaagggcttccacaatctatgtaaatgtcttctctggagaa
gctacaattcaatttccaagtgctaggcaaatggcaagaggaggaattctagctgatgca
atgggtctcggaaagactgtgatgacaatagctctaatcctttcaagacttggtagagga
aatcctgataatgaaaagcctgattcaagaaaagccaatggtagcataaccacaaacaag
aaaagagacacttacggaaatgccccacgcagagcaaagggaggcactcttattatttgt
cccatggcattgttaagccagtggaaggatgagcttgagactcactcaaggcctgaaacg
atatcaatttttgttcactatggtggtgatagaaccaatgatcccagggtgatctcagag
catgatgtggtcttaacaacatacggggtcttaactgctgcttataaaagtgatgccggg
aacagcatttatcacagcgttgactggtatagggtggttttagatgaagctcatacgatt
aaatcctcaaaaacactaggagctcaagcttgctttgcattgtctgcgcattgccgttgg
tgtctcactggaaccccgcttcagaataatttggaagacctctacagccttttgtgcttc
ttgcacgtggaaccatggtgcaactgggcatggtggaagacaaagattcaagggccttat
gagaatggtaatccaacaggactgaaatggatcaaagcaatattaaggctactgatgttg
agaagaacaaaggaaacaaaggataaagagggaaggcctattcttgttcttcctccaact
gatattcaagtcatcgagtgcgagcagtcagaagctgaacgtgatttctatgatgcttta
ttcaaaagatctaaagttcagtttgatcaatttgttgcacaaggcagggttcttcacaat
tatgcatcgattctcgagttattactacgactaaggcagtgttgcaaccatccttttctt
gtaatgagtcgagctgattcgcagcagtattcggacttgaacaaactagcgagaaggttc
cttgaagctcaccctggttcggtcactttgaatcaaaatgccccaaccaaggcctacatt
gaagaagttgtagatggtatccggaggggtgaaaacnnacagtgtccaatatgcatggaa
tctgcagatgaccctgtcctcacaccatgcgcacataggatgtgcagggaatgtctcctt
tcgagttggcgaataccaacacttggatcatgtccaatctgcagaacactactgaagaaa
actgatctcataacatgtccaactgaaaacaagttccgagttgacatagacaaaaactgg
aaggagtcatcaaaagtttcaaagctattagactgcttagaacgaagtcgccggtcaggt
tctggtgaaaagagcattgtgttcagtcaatggacttcatttctagatctcttagaaatc
ccattaaagaggaaaggaattggattcttacggtttgatgggaaactggctcaaaaacaa
agggaaagggttctaaaagagttcaatgacacaagagagaaactggtattgttgatgtct
ttgaaagctggtggagttggcctgaatttaacagcagcctctaatgtcttcttaatggat
ccttggtggaaccctgcagttgaagaacaagcaatcatgcgaattcatcgaattgggcaa
aagagaacagttactgttagaagattcatagttaaggaaacagtggaggaaaggatgcaa
caagttcaagcaaggaaggagaagatgattgcaggtgctttaactgatgaagaagttagg
tcagctaggattgaagagctgaaaatgcttttcagatga

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