Gossypium hirsutum (upland cotton): 107928461
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Entry
107928461 CDS
T04793
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107928461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107928461
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107928461
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107928461
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107928461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
Motif
Other DBs
NCBI-GeneID:
107928461
NCBI-ProteinID:
XP_016715196
UniProt:
A0A1U8LKS1
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Position
A12:complement(8551954..8557638)
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AA seq
697 aa
AA seq
DB search
MDDAEGGLSFDFEGGLDAGPTAPTASMPVVNSDPSAANNTNNFTAPGGVQASINDPVANQ
GGGAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLFGECREQDCVYKH
TNEDIKECNMYKLGFCPNGPDCRYRHAKFPGPPPPVEEVLQKIQQLSAYNYNNKFYQQRN
AGFPQQTEKSQIPQAQNNVNQGAAGKPSATESTNVQQQQQQQQVQQPQQQVSQTQIQNVP
NGQSNQANRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN
VILVFSVNRTRHFQGCAKMTSKIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKT
RHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLAAESKREEEKAKG
VNSDNAENPDIVPFEDNEEEEEEESEEEDESFGAAAQGRGRGRGIMWPPHMPLGRGARPM
PGMRGFPPMMMGGDGFSYGPVTPDGFGMPDLFGAPRPFAPYGPRFSGDFTGPASGMMFPG
RPPQPGGMFPSGGIGMMMGPGRAPFMGGMGPTGTNPARGGRPVGMPPMFPLPPAPASQNS
GRAIKRDQRTPTNDRSSAGSEQGRGQEMGGPGGGLDDETQYQQEGQKAHHEDQFAAGNGF
RNDDSESEDEAPRRSRHGEGKKKRRGLEGDVATASDH
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgcggagggaggtctcagcttcgatttcgagggcggtctcgatgccggccct
accgcccccactgcctccatgcctgtcgtcaattccgatccttctgccgccaacaatacc
aacaattttaccgcccctggtggtgttcaggcttcgataaatgatcccgtcgcaaatcaa
ggtggtggagctggccgaaggagcttccgtcagactgtgtgccggcattggctccgcagt
ctctgcatgaagggtgatgcctgtggcttccttcaccagtacgacaagtcccgcatgccc
gtctgccgtttttttcggctttttggtgagtgccgggagcaagattgtgtgtacaaacac
accaacgaggatatcaaagagtgtaacatgtacaagctaggtttttgtcctaatggtcct
gactgccgatataggcatgcaaagttcccaggacctcctcctcctgtggaagaagtcctg
cagaagattcagcaattaagtgcttacaattataacaacaaattttatcaacagcggaat
gctggcttcccccaacaaactgaaaaatcacagattccacaagcacaaaacaatgtaaac
caaggagcagctggaaaaccttcagcaactgaatctactaacgtgcagcagcagcagcag
caacaacaagttcaacaaccgcaacaacaggtcagccagacccagatacaaaatgtcccc
aatggtcagtctaaccaggcaaacagaactgctatacctttgcctcaaggaatatctagg
tattttattgttaaaagttgcaaccgtgaaaatctggaactatctgttcaacaaggagta
tgggcaactcaaagaagcaatgaggctaaactgaatgaagcttttgattctgctgaaaat
gtgattttggtcttctccgttaaccgtacacggcatttccagggttgtgccaaaatgaca
tccaaaattggtggatctgttgctggaggcaactggaaatatgctcatggaactgcacat
tatggacgtaatttctcggtaaaatggttaaagttatgtgagctgtctttccacaaaact
cggcatttgaggaacccctacaatgagaacttaccagtgaagataagtagagattgccag
gagttagagccttctgttggtgagcagttggcctccttgctttatcttgagccagatagt
gagcttatggcaatttcactggcagcagaatcaaaaagagaagaagagaaagcaaaggga
gtcaattcagataatgcagagaaccctgacattgttccatttgaggacaatgaagaagag
gaagaggaagaaagtgaggaggaggatgaaagctttggtgctgcagctcagggcagagga
agaggcagaggaatcatgtggccccctcacatgccgctaggccgtggtgccagacccatg
cctggaatgcgaggttttccaccgatgatgatgggtggtgatggcttttcttatggacca
gttacacctgatggttttgggatgccagatctttttggtgctcctcgtccttttgcaccg
tatggacccaggttttctggagattttacaggtcctgcatctggcatgatgtttccaggg
cgacctccacagcctgggggaatgtttccatctggtggaattgggatgatgatgggtcca
gggcgtgcaccatttatggggggtatggggcccacaggtactaatcctgctcgaggtggc
cggcccgttggcatgcctcctatgtttcccctacctccagcacctgcctctcagaactct
ggccgggctattaaaagagatcagaggacaccgaccaatgacagatctagtgcaggatca
gagcagggtagaggtcaggaaatgggtggtccagggggcgggttggacgatgagacacag
tatcagcaagaaggacaaaaggcccaccatgaagatcagtttgctgcaggcaacggcttc
agaaatgatgacagtgaaagtgaggatgaggcacccaggaggtcaaggcatggggagggg
aagaagaaacggagaggcttggaaggagatgttgccactgcttctgatcactag
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