Gossypium hirsutum (upland cotton): 107928604
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Entry
107928604 CDS
T04793
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107928604
03036 Chromosome and associated proteins [BR:
ghi03036
]
107928604
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
107928604
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107928604
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
107928604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
DEAD
PhoH
Helicase_RecD
Mov-10_helical
AroM
AAA
SNF2-rel_dom
ATPase_2
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
107928604
NCBI-ProteinID:
XP_016715348
UniProt:
A0A1U8LLG9
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Position
A09:complement(82538327..82544319)
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AA seq
874 aa
AA seq
DB search
MGTVGDKSDDEYSVIGDKREINFIDYANNKSVCDYNHEGGPLIISAPFPFSKGNPQSVFV
GATAFDLISIENTTSEPVELWTKIYASTPKDSFVLSLMQPPSANSEDDTSQGFVELFDLE
DRMIQPGETLTIWLSCKAKEIGLHTTIVHFDVEGERLERMVFLLVEDKISQSLASKKPYS
RAQRKKQFPVDEFVTGSRPVRAMGRGVRNRLLPYDIPKDIRELVENKQTPDAIKAGLTRD
NYVSYFKHLLILEELQLEEDMRAYNMENINMKKKGKYLSLQVPGLAEKRPSLVHGDHIFA
KLACEDASGSDRVYEGCIHRVEADEVYLKFAPEFHSNHIDENLYNVQFTYNRINMRRQYQ
AIDAAKSLNVSLLFPSGSPRSRVIETTPLVPICCTLNEEQMCSIEMILGCKGGPPYVIFG
PPGTGKTMTIVAAILQLYSTQKSSRILVCAPSNSAADFILERLLNEESVEIKENEIFRLN
AATRPYYDVNPDFLRFCFFDELVFKCPPLSVLACYRIIISTYMSSSLLYAESIGKGHFSH
IFLDESGQASEPESMIPVANLCRRETVVVLAGDPKQLGPVIYSKEAENFGLGKSYMERLF
EHEFYSNGNENYVTKLVRNYRCHPEILYLPSLLFYNDELIPCKDDIGSLLNSVKFLPNKD
YPVFFFGIQGCDEREGSNPSWFNRIEASKVVEIVSSLTASGILNEKDIGVITPYRQQVLK
LKKAFENLDIPDVKVGTVEQFQGQERKVIIISTVRSTIKHNEFDRTHCLGFLSNPRRFNV
AVTRAIALLVIVGNPHIIAKDPYWSKLIWRCADHNSYQGCALPERQEYEDDASIPEDCRV
DDESSIAEMWGEDAKEIGNLVPFTDEAEWSDGWK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgggaacagttggtgacaaatccgatgatgaatattctgtcatcggggacaaacgcgaa
atcaatttcatcgattatgcgaacaacaaatctgtttgtgattacaatcatgaggggggt
cctctcataatttctgcaccattcccattttcgaaagggaatcctcaatctgtattcgtg
ggagcaactgcatttgatttgatcagtatcgaaaacaccactagtgaaccggttgagttg
tggactaaaatttacgcatcgacgcctaaggattctttcgttctttctttgatgcaaccc
ccgtcggcaaattctgaagacgatacgagccaagggtttgtcgagcttttcgatttagag
gaccgaatgatacagcctggagagactttaacgatttggttgtcttgcaaagcaaaggaa
attggcttgcatactaccatagtgcattttgatgtggagggtgaaagattggaaagaatg
gtctttctcttggttgaagataagatctcacaatctttggcttctaagaagccatattcc
agagctcaaagaaagaagcaatttccagtggatgaatttgttacagggtcacgcccggta
agggcaatgggtcgaggtgttcgaaacaggcttctcccatatgacattccgaaggatatt
agagagctggttgagaataagcagactcctgatgctattaaagcaggtcttacaagggat
aattatgtatcttacttcaaacatctcctaatcttggaagagttacaacttgaggaggac
atgagggcctataacatggagaatatcaacatgaagaagaaagggaagtatttatcactt
caggtccctgggctagctgaaaaaaggccttcccttgtccacggagatcatatttttgct
aaacttgcatgtgaagatgctagtggatcagatagagtttatgagggttgtatccatcgg
gtagaagctgatgaagtgtacttgaagtttgcaccagaatttcactcgaaccacatagat
gagaatctttataatgtgcagttcacgtataaccgaatcaatatgcggaggcaataccag
gccattgatgcagcaaaaagcctaaatgtaagtctcctttttccatctgggtcacccaga
agtagggtgattgaaaccactccactagtgcccatatgttgtacacttaacgaggagcag
atgtgttcaattgagatgatccttggctgcaaaggaggacctccttatgtgattttcggg
ccaccaggtacagggaagaccatgacaatagtggcggcaatcctccagctctactcaacc
caaaaatcttctcgaattcttgtgtgtgcaccttcaaatagcgcggctgatttcatacta
gagagactccttaatgaggagtctgttgagattaaagagaatgaaatattcagactaaat
gcagctacacgaccatattacgacgtcaacccggattttctccggttttgcttctttgat
gagcttgttttcaaatgtcctccacttagtgttctcgcctgctacagaatcatcatctca
acttacatgagttcctcccttctgtacgcagaaagtattggtaaaggccatttctctcat
attttcttggatgagtcaggtcaagcttcagagccagaaagcatgatccctgtagcgaac
ctttgccgaagagagactgttgttgttcttgctggggatccaaagcagttaggtccagtt
atatactctaaagaagctgagaattttggactggggaagtcatacatggaaaggttgttt
gaacacgaattttattctaatggcaacgaaaactatgtgacaaaactggttagaaactat
cgatgtcacccggagatcctctatctcccttcacttctcttctacaatgatgaattgatc
ccttgcaaagatgacataggttcattattgaactcagtaaagtttcttcctaataaggac
taccctgtttttttctttggtatacaaggttgtgatgagagggaaggaagtaatccgtcg
tggttcaatcggattgaagccagcaaggttgtagaaattgttagcagtttgacagcaagt
gggattctgaacgagaaagatataggggttataaccccctataggcagcaagtccttaaa
ctaaagaaggccttcgagaatctcgacataccagatgtcaaggttggcaccgtcgaacaa
tttcaaggccaagaacgaaaagttatcattatatctaccgtccgatcaacaatcaaacac
aatgagttcgacagaacccactgtctcgggtttttgagcaatcctagaaggtttaatgtg
gcggttactcgcgccatagctttacttgttattgttggaaatcctcacataattgccaag
gacccttactggagcaagcttatatggcgttgtgctgatcataactcttaccagggttgt
gctctgcctgaaaggcaagagtatgaagatgacgcttcaattccagaggattgtcgggtc
gatgacgaaagcagcattgctgaaatgtggggtgaagatgccaaggaaattggaaatctc
gttccttttacggatgaagccgagtggtccgatgggtggaaatga
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