Gossypium hirsutum (upland cotton): 107928742
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Entry
107928742 CDS
T04793
Name
(RefSeq) protein CHROMATIN REMODELING 20-like
KO
K10779
transcriptional regulator ATRX
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107928742
03036 Chromosome and associated proteins [BR:
ghi03036
]
107928742
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
107928742
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107928742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_34
Motif
Other DBs
NCBI-GeneID:
107928742
NCBI-ProteinID:
XP_040960471
LinkDB
All DBs
Position
D11:56784994..56800953
Genome browser
AA seq
1484 aa
AA seq
DB search
MEEKHDEVEDVDRASSGSFIVDSDDDDEPSTSGQDDGLHFEEPLTEKEIEELVSEFLEVE
SKAAEAQETLEKESLANVESEVREELAQTLKGDDLETAIADEMTTFIEQWEAVLDELETE
SAQLLEQLDGAGIELPSLYKWIESQAPNGCCTEAWKRRAHWVGSQVTSETAESLADAEKH
LQTQRPVRRKHGRLLEEGASGFLQKKLSDDMSQEAPTGKSDIEWSSFMKICSNGLPEDET
GFGSKNWASVYLASTPQQATLMGLKFPGVNEVEEIEDVDGSSDNPLVADAIENERELILS
EEQRKYFRKVKEEDDLNIDKKFQLHLKKRRHRRRSKQVTESKLDQSQPLEDNSNSISNKA
SREDRECVPNNENGVACQILKDDVLESFESCKLTRTQSSPNGMSELDMSGSGISVGSKRS
NEDMEANENNKKARTVITASDDEANITVKDDLISSKLDDQFTIPEKSDADVGVESISSEC
LTDKFICTACHKLAVEVQQHPLLKVIICRDCKCFLEEKMHMKDSECSECYCGWCGQSNDL
LSCESCKTLFCTKCVRKNIGEKYLLEVQASGWQCCCCSPTILQKLTSDLERAMGSSDTTV
SSSDSESENSDADISTSVSSKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSMQF
SAKYNMNSSSCSRNLLDEASVEVLGDANTGYIVNVRREDGEEAVRVPPSISAKLKVHQIA
GIRFMWENIIQSITKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLKTALIV
TPVNVLHNWRQEFMKWRPSELKPLRVYMLEDVPRERRAELLAKWRRKGGIFLIGYTAFRN
LSLGKHVKDRNMARDICYALQDGPDILVCDEAHTIKNTRADTTQALKQVKCQRRIALTGS
PLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTHEDVKIMNQRSHILYE
QLKGFVQRMDMSVVKKDLPPKTVFVIAVKLSPLQRKLYKRFLDVHGFANDRPSNEKIRKS
FFAGYQALAQIWNHPGILQLNKEDRNYISREDAAENFLADESSSDENIDYNLGVGDKTRS
MNDSLHEKNDYGFIQKGWWRDLLHQNNYKELDYSGKMVLLLDIITMCSNVGDKALIFSQS
IPTLDLIELYLSRLPRRGKKGKFWKKGKDWYRLDGRTESSERQKLVEKFNEPMNKRAKCT
LISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEE
KIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGEEENFDTLMELSEENGNQNMAS
EVGKSLNPKIPLSHGSCSSDKVMESLLSKHHPRWIANFHEHETLLQENEDEKLSKEEQDM
AWEVFRKTLEWEEVQRVSLDESAAERRPVVPDVAPPPKPEPVMNHLTKPQGIFRSRIVQR
KCTNLAHLLTLRSQGTKFGCSTVCGECAQEISWEDLNRDSKIAR
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaaaacatgatgaagttgaagatgttgacagagcctctagtggttcttttatc
gttgattcagatgatgatgatgaaccatcaacatctggacaagatgatgggttgcatttt
gaggagccattgactgagaaggaaatagaagagctggtatctgagtttttggaggttgag
agcaaggctgcagaggctcaagaaacacttgaaaaggaatctcttgctaatgtggagagt
gaagtgagagaggagctggcccaaactcttaagggggatgatttggagacagctatagca
gatgaaatgaccacttttatagagcagtgggaagctgtgctagatgagcttgaaacagag
agtgcacaattgttggaacaacttgatggggctggtattgaattacccagcctttataag
tggattgagagtcaagctccaaatggttgctgcactgaagcttggaaaagaagagcacac
tgggtaggatctcaggtgactagtgaaactgctgagtctttagctgatgctgaaaagcat
cttcaaacccagaggcctgtaaggaggaaacatggtagactattggaggaaggtgctagt
ggatttctgcaaaagaagctttctgatgatatgagccaggaggcaccaacagggaaatcg
gacatagagtggagctctttcatgaaaatttgttctaatggtttacctgaggatgaaact
ggttttggcagcaagaactgggcttctgtctacttggccagcaccccacaacaagctaca
ttaatgggacttaaatttcctggagtcaatgaggtggaggagattgaagatgttgacggc
agttcagataatccactggttgcagatgccatagaaaatgagagagagctgattctttct
gaagagcaaaggaaatattttagaaaggtcaaagaggaagatgatctaaatattgacaag
aaatttcagctgcatttgaaaaagaggagacatcgaaggagatctaaacaggtaacagaa
agcaaattagatcagtcccagcctttagaagacaattctaactcaatttcaaacaaggca
agtagagaagatagggaatgcgtgcctaataatgagaatggggttgcttgtcagattttg
aaggatgatgtgcttgaaagttttgaatcatgtaagctgaccaggacacagtctagtcct
aatggcatgtccgagttagatatgtctggttctggaatatctgttgggtccaagcgttca
aatgaagatatggaggctaatgaaaataataagaaggcacggactgttatcacagctagt
gatgatgaagccaatattacagtgaaggatgacttgatttcctccaaattggacgatcag
tttactattcccgaaaaaagtgatgctgatgtgggtgttgaatctatttcttcagagtgt
ctgactgacaagttcatttgtaccgcttgtcataaactggctgttgaggtgcagcaacat
ccacttcttaaagtaattatttgcagggattgcaaatgcttcctggaagagaaaatgcat
atgaaggactctgagtgctcagagtgttattgtggatggtgcggacaaagcaatgaccta
ttgagttgcgagtcatgcaaaacattattttgtacaaagtgtgtaaggaagaatattggt
gaaaaatatttgcttgaggtccaggcctccggttggcaatgttgttgctgctcgccaact
attctgcaaaaattaacatcagatttagagagagccatgggatcttcagacacaacggtt
tctagctctgatagtgagtcagagaattcagatgctgatattagtacttccgtcagttct
aagcgaaagcaaaaaaagaaaattcgaaggattctcgatgatgctgaattaggagaagag
acaaagaggaaaattgcaatagaaaaggaacgtcaagagcgcttaaaatcaatgcagttt
tctgccaaatataacatgaactcttcaagctgcagtaggaacttattagatgaagctagt
gtagaggtgcttggtgatgccaatactggttatatagtgaatgttaggagggaggatggt
gaagaagccgtaagggttcccccaagcatatcagccaaattaaaagtccatcagatagct
gggattcgatttatgtgggaaaacattatacagtcaatcacaaaagtgaagtctggggat
aagggtcttggttgcattctagctcacacaatgggccttggtaaaacatttcaggttata
gctttcttatacactgcaatgagaagtgttgatttgggattaaaaactgcacttattgtc
actcctgtaaatgtgctgcacaactggcgccaggagttcatgaagtggagaccttcagaa
ttaaagcccctccgtgtctacatgttagaggatgtgccaagggagagacgggcagaattg
cttgccaagtggagaaggaaaggtggaatttttttaataggctatactgcttttcgaaac
ttgtctcttggaaaacatgtgaaggatcgcaacatggctagagatatttgttatgctttg
caggatggtcctgatatactagtttgtgatgaagcccatactattaagaacaccagggct
gatacaacccaggcgttgaaacaagtgaagtgtcagaggaggattgccttaactggatca
ccacttcagaacaatctcatggagtactactgtatggttgattttgtaagagaaggtttt
cttggaagcagccacgagtttaggaaccgcttccaaaatccaatagaaaatggtcagcac
acaaattcaacgcatgaagatgtaaaaattatgaatcaaaggtcccacatcctttatgaa
cagttaaaaggattcgttcagaggatggatatgagtgtggtgaaaaaagacttgcctcct
aaaactgtctttgttattgctgtaaagctttctccactacagcgtaagctctacaagaga
ttccttgatgtacatggttttgcaaatgacagaccttctaatgaaaaaattaggaagagc
ttttttgctgggtaccaggccttggctcagatatggaaccatcctgggatactgcaattg
aacaaagaagatagaaactatattagtcgtgaagatgctgctgaaaacttccttgcagat
gagagctctagtgatgaaaatatagattataatttgggtgtaggagataaaacaaggagt
atgaatgattctctgcatgaaaaaaatgattacgggtttattcagaagggttggtggaga
gatcttcttcaccaaaataattataaggaacttgactacagtggcaaaatggttttgttg
cttgacatcataaccatgtgttcaaatgtgggtgacaaggcactgatttttagtcagagc
attccaactttagatctgatagaactatatctttcaagattacctagacgcggaaaaaaa
gggaagttctggaaaaaggggaaagactggtataggttggatggaagaacagaaagttct
gaaaggcaaaagttggttgagaagtttaatgagccaatgaataaaagagccaagtgtact
ttgatctctaccagagctggatctcttgggattaatctatatgctgcaaatcgtgtaatt
attgttgacggttcttggaaccctacatatgatcttcaagctatatatcgggcctggagg
tatggccagacaaagccggtgtttgcttatcgattgatggcacatgggactatggaagaa
aaaatttataagcgtcaggtgacgaaagaaggtcttgctgcaagggttgtagatagacaa
caagtacataggactatctccaaggaggagatgttacatctgtttgaatttggtgaggaa
gagaactttgatactttaatggaacttagtgaagagaacggaaaccaaaatatggctagt
gaagttggaaagtcactgaacccgaagattcctctctcccatggaagctgttcctctgac
aaagtaatggaaagtttacttagtaaacatcatccaaggtggattgccaatttccatgaa
catgagacccttttgcaagagaatgaagacgaaaagctctcgaaagaagagcaagatatg
gcttgggaagtctttcggaaaaccttagaatgggaggaggtacagcgagtatcccttgat
gaatctgcagcagagcgcaggcctgttgttcctgatgtggcccctcctcctaaaccagag
cctgtgatgaatcacttaacaaaaccccagggtattttcaggagtcggattgtgcaacga
aaatgtactaatcttgcccacctacttactctcagaagccaggggacaaaatttggttgt
agtactgtatgtggggaatgtgcccaggagataagctgggaggacttaaatagggacagc
aaaatagcaaggtaa
DBGET
integrated database retrieval system
