Gossypium hirsutum (upland cotton): 107928852
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Entry
107928852 CDS
T04793
Name
(RefSeq) exosome complex component RRP43-like
KO
K12586
exosome complex component RRP43
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107928852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107928852
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107928852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
107928852
NCBI-ProteinID:
XP_040942566
LinkDB
All DBs
Position
D01:complement(647656..651760)
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AA seq
302 aa
AA seq
DB search
MGLPNANGDLSTEVEVDAFRRLFPLHFYEKHLLESISPDARPLGRARETTIALGAVASAN
GSALAKIGSTTMLAAIKMKVMTPSLETPDEGCIVIDFHMPPICSPIVRPGGPAEAAPVVA
KQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLEIP
VPVVSLNDDGKIVLSEEQGLSDREPVNKEKRKINLSSIPFSLTCVLHKNYILADPTAEEE
SIMDTIVTVVLDSSSQLVSLHKPGGTVLAYTSAIQDCIALTRQRVKELQKILEEAISGME
VD
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgggattaccaaatgcgaacggtgacttgtcaactgaagttgaggtagatgctttcaga
cgcctctttccccttcatttctacgagaaacatcttttagagtctataagtcctgatgct
cgtccgcttggaagagcaagagaaaccaccattgcccttggggctgttgcatctgctaat
ggttcagcacttgcaaaaattggttcaactactatgttggctgctatcaaaatgaaggtc
atgaccccttcattggaaacaccggatgagggttgtatagtgattgatttccacatgcct
ccaatttgttctccaattgttaggcctggcggaccggctgaggcagcaccagtcgttgca
aagcaattgtcagacactattttaagctctggcatgatcaatttgaaggaactgtccttg
gttagtggaaaagctgcttggatggcatatttggacatatactgtttggatgctgatggt
gctctttttgacactgcattactctcagctgttgctgccttttctcatttggaaatcccg
gtcccggtggtatctctcaacgatgatggaaagatcgttttatcagaggaacaaggacta
tctgacagggaaccagtcaataaggagaagagaaaaattaatctgagcagcattccgttt
tcattgacatgtgtacttcacaagaactacattttggcagatcctactgccgaggaagaa
tctattatggacacgattgtaaccgtggttttagattcatctagtcaactcgtctcgctt
cataaaccaggtggaacagttctagcatatacatcagctatccaggactgcattgcatta
acacggcaaagagtgaaggaacttcaaaagattctagaggaagccatttctggtatggag
gttgactag
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