Gossypium hirsutum (upland cotton): 107928882
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Entry
107928882 CDS
T04793
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107928882
09122 Translation
03013 Nucleocytoplasmic transport
107928882
03015 mRNA surveillance pathway
107928882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107928882
03041 Spliceosome [BR:
ghi03041
]
107928882
03009 Ribosome biogenesis [BR:
ghi03009
]
107928882
03012 Translation factors [BR:
ghi03012
]
107928882
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107928882
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107928882
mRNA cycle factors
Stress granule specific factors
107928882
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107928882
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Helicases
107928882
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
eIF-4
107928882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_30
Cas3-like_C_2
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
107928882
NCBI-ProteinID:
XP_016715648
UniProt:
A0A1U8LQD1
LinkDB
All DBs
Position
D01:complement(1068037..1070930)
Genome browser
AA seq
405 aa
AA seq
DB search
MAAATTSRAARRMGAEDEKLVFETTEGIEPILSFDQMGLKDDLLRGIYNYGFEKPSAIQQ
RAVMPIINGRDVIAQAQSGTGKTSMIALTVCQVVDTASREVQALILSPTRELASQTEKVI
RTIGDFMNIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLIL
DESDEMLSRGFKDQIYDVYRHLPPELQVCLISATLPHEILEMTSKFMTDPIRILVKRDEL
TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSS
MHGDMPQKEREAIMAEFRDGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIG
RSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgacgacgagcagagcggctcggcggatgggagccgaggatgagaagcta
gtgttcgagacgacggaaggaatcgagccgatattgagtttcgatcagatggggttaaaa
gacgatctcctccgtggaatctacaattacggctttgaaaagccgtcggctattcagcag
agagccgttatgccgataatcaatggccgcgatgtgattgctcaagcccaatctggtacc
ggtaaaacttccatgattgctctcaccgtttgtcaagtggtcgacaccgctagcagagag
gttcaagcgttgatattgtcacctacaagagaactggcgtctcaaacagagaaagtgata
aggacaattggcgatttcatgaatatacaagcacacgcgtgtattggaggcaaaagtgtg
ggtgaagatataagaaagctagaaaacggagttcatgtagtgtcgggaactcctggtaga
gtctgtgatatgatcaagaggagaaccctacgtacaagagctattaaactattgattctc
gatgaatctgatgagatgttaagcagagggttcaaagatcaaatttacgatgtttacaga
catcttccacccgagcttcaggtttgtttgatatctgctacacttcctcatgaaatcttg
gaaatgacgagcaaatttatgactgatcctataaggatccttgtgaagcgtgatgagttg
acgctagagggaatcaagcagtttttcgtggcagttgaaagagaggagtggaagtttgat
acgctatgtgatctttatgatacattgacaatcacccaagctgtcattttctgcaacaca
aaacgaaaggttgattggctaactgagaagatgcgtagcaataactttacggtatcgtca
atgcatggggatatgcctcaaaaggaaagagaggcaattatggcagagtttagggatggt
gcaacccgtgttcttatcacaacggatgtctgggctagggggctcgatgttcaacaggtt
tccctggtgataaattatgacctcccaaataatcgagagctttacatccataggattggt
cgatcaggtcgttttggaagaaagggtgttgctataaattttgtgaaaagtgatgacatc
aagattcttcgagatatcgagcaatactatagtacccagatcgacgaaatgccgatgaat
gtcgctgatcttatataa
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