Gossypium hirsutum (upland cotton): 107928928
Help
Entry
107928928 CDS
T04793
Name
(RefSeq) squalene synthase 2 isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00100
Steroid biosynthesis
ghi00909
Sesquiterpenoid and triterpenoid biosynthesis
ghi01100
Metabolic pathways
ghi01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
107928928
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
107928928
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ghi01006
]
107928928
Enzymes [BR:
ghi01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
107928928
Prenyltransferases [BR:
ghi01006
]
Terpene biosynthesis
Squalene/phytoene synthase
107928928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
107928928
NCBI-ProteinID:
XP_016715723
UniProt:
A0A1U8LQK8
LinkDB
All DBs
Position
D01:complement(207552..212393)
Genome browser
AA seq
427 aa
AA seq
DB search
MGSLGALMKHPDDFYPLLKLKMAARNAEKQIPSEPHWGFCFSMLHKVSRSFALVIQQLDT
ELRHAVCIFYLVLRALDTVEDDTSVAADVKVPILIDFYRHIYDPDWHFSCGTKEYKVLMD
QFHHVSAAFLELEKGYQEAIEDITLRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGLGL
SKLFHAYGSEDLAPESLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVKKL
EDLKDEENSVKAVQCLNDMVTNALLHVDDCLKYMSALRDPAIFRFCAIPQIMAIGTLALC
YNNIKVFRGVVKMRRVFQVDVHFISASFPGLTAKVIDRTKSMTDVYGAFYDFSCILKAKV
DKNDPNAQKTVSRLDSILKTCRDSGVLNKRKSYIIENQSNYTPFVVVLLFIIFAIFLVNL
NPNWPNN
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggggagtttgggagcactgatgaaacatccagatgatttttatccattgttgaaattg
aaaatggcggcgagaaatgccgagaaacagatcccatcggagcctcactggggtttttgt
ttctctatgcttcacaaagtttctcgtagtttcgctcttgttattcagcagctcgataca
gagcttaggcatgcagtttgcatattttatttggttcttcgagctcttgatactgttgag
gatgatactagtgttgcagcagatgtcaaagttccaattcttatagatttttatcgtcac
atatatgatcccgactggcacttttcttgtggtacaaaggaatacaaagttctcatggat
cagtttcatcacgtgtctgctgcttttctggaactcgaaaaaggttatcaggaggcaatt
gaggatattacactaagaatgggagcagggatggcaaaatttatttgcaaggaggtcgaa
acagttgatgactatgatgaatattgtcactatgtagccggacttgtcggattaggtttg
tccaagctattccatgcctatggatcagaagatttggctccggaatcgctctccaattca
atggggttgtttcttcagaaaacaaatattatccgagattatctagaggatatcaatgaa
ataccgaagtcacgcatgttttggccacgccagatttggagtaaatacgtcaagaaactt
gaggacttgaaagacgaggaaaactcggtcaaggcggtgcagtgcttgaatgacatggtc
actaacgctttactacatgttgatgattgcctgaaatacatgtccgctttacgtgaccct
gcaattttccgattttgtgcaatccctcagatcatggctatcggaacactagccttgtgt
tacaacaacatcaaagtcttccgaggtgttgtgaaaatgaggcgcgtatttcaggtcgat
gttcatttcatctcggcctcatttccaggtttaactgcgaaagtcattgatcgaacaaaa
tcaatgactgatgtctatggtgctttttatgatttttcttgcattttgaaagccaaggtc
gacaaaaatgatcctaatgcacaaaaaaccgtgagccgactcgattcaatcctgaagact
tgccgagactcgggtgtgctaaacaaaaggaaatcatacataatcgagaatcagtccaat
tacactccgtttgtggttgttttgcttttcatcatattcgccatctttttggttaacctg
aacccaaactggcctaataactag
DBGET
integrated database retrieval system