Gossypium hirsutum (upland cotton): 107929118
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Entry
107929118 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: SAC3 family protein B-like
KO
K23719
nuclear mRNA export protein SAC3
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107929118
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX-2 complex
107929118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAC3_GANP
INT10
Motif
Other DBs
NCBI-GeneID:
107929118
NCBI-ProteinID:
XP_016715953
UniProt:
A0A1U8LRA9
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All DBs
Position
A09:complement(83817652..83826792)
Genome browser
AA seq
1619 aa
AA seq
DB search
MSGFGKHSGPTTAPKSANPFQFQRPPPPSSSPPIRRSSYTPSSSPPIRPSSYTPSSTPPI
RPSSYTPPSTTPIRPSRVNEAADRVWTPLSAFENFGPALRPYQYGGVQRPMESSPRWDDG
KIPLEDYDAQSRFRPPVVTSFAASQNPETSFTAKARFQESKSTKSPPTVSIDDTVPRNSS
QTILQRPSFNPHMPQNPVKLPANYPDFPAHQDRSMASPHLGSADYRKNFVNEVPDMQVPK
QGRLPSQQFDDEFTQEHHKSVRNGSKRPSGSPPRLGTKSISPSSNFPIRPRSLPSARNDP
PPTVRNIGPPVSKRTRSPLIYHDDFLQESSTPIEDDTERELQAKAKRLARFKTELSETVE
TKPPDIADQRLSTTRFQHNVEERKKHVGEQPMDSSGESLNDLVSFDFDGTEASRVIIGLC
PDMCPESERAERERKGDLDQYERVDGDRNQTSESLAVKKYTRTAEREASLIRPMLVLQKT
IDYLLNLLDQPYDDRFLGIYNFLWDRMRAIRMDLRMQHIFDQGAITMLEQMIRLHIIAMH
ELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKKGINVPTEKEFRGYYALLKL
DKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARNVARACRTGNFVAFFRLARKASYLQA
CLMHAHFAKLRTQAFASLHSSLQNNQGLPISHVAEWLGIEEEDIESILDYYGFSIKEFEE
PYMVKDGSFLNAENDYPTKCSRLVHQKRSRTIALDVATPHEVTSLPIGASKESQPSKAYK
QRANVSPSPKRKSSVSAADEELPDSKGVPSPKSSSQLHLVTETSKGLEQLPEGHLKSGAS
KPFNFSMDRSSPRSFPAKVVVMEKSNNVTVSSLPDGTNTYGMEQMPPLTFSQASQPERSP
SGRFHLSVENPVPQSMAIIDNVKSSPMRSPSGKYTENALPQTMDLNDLKSQSERPSVKYD
KALENSVPQGMEINDLGDKPLDDHQEIENQQIVANIQRKEVAEAKLKLILRLWSRRAAKQ
RELREQRQLAAEAALSSLPLGIPVRQNNDQWSTFDELDFDHVMSERCEKYERSWSRLNVS
DVVSSILGQRNPDAKCLCWKIILCSPESSQGEQPRQNNQVGHLAAGPWLFSKIMPSTEDN
NDDDLAITSPGMSIWKKWVPSLCCTDLTCCLSVVKDANCDNLDEVVSGANAVLFIVSQNI
PWKLQKAKLYSLLNSVPPGACLPLLVLSGSYNVEDSDPSSVIVNELGLHEIDKSRVSCFL
VVFLVGKWHFSNGFFSDEELREGLKWLADKSPLQPVLSSVKMRELVMSHLSPVLEELDKM
GDYEVGPNHCISVFNEALDWSFGEITAAIKANPTNWPCPEAMLLKDFSDEFLAAKLFLPS
VGWSSPAKLXPLEHALKDCRLARFPDDISLLQRGSMMGKDIDNHRLLLENCLVEYLTQST
KMMGIPLATKETSVMIQRNTRLELRNLSYYLVPNWITIFRRIFNWRLSSLSTGACSFSYV
LQTHHVPPLGDLLKLPLEVDTSPNCLSHPSLDEILEVGCSPLESRRINFDPQPSQDKEDH
TSQKNGLAITGDVACTTSKPDSSYSKMVVAGTETDRLSQLLEKCNIVQNSIGEKLSIYF
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggttttgggaagcattcaggtccaacaactgctccaaaatctgcaaatcctttt
cagtttcaacgccctcctcctccttcatcctctcctccaatcaggcgctcgagttatact
ccttcatctagtcctccaatcaggccctccagttatactccttcatccactcctccaatc
agaccctcgagttacactcctccatctactactccaatcagaccctcaagggtaaatgaa
gctgcagatagagtttggacaccactgtcggcttttgagaatttcggtcctgctttgaga
ccttatcagtatggtggggtccaaaggcctatggaatcttctcctagatgggatgatggc
aaaattcccttagaagattatgatgcccaaagtcgtttcagacctcctgtggtcacatca
tttgctgcttcacaaaatcctgaaactagttttactgctaaggctagatttcaagagtca
aagagtactaaatcaccaccgacagtgtctatagatgacactgtaccaagaaattcgagc
caaacgatccttcaaagaccttcttttaatccccatatgccacagaatcctgtcaagttg
ccagccaactatcccgatttcccagctcatcaggaccggtccatggcctcaccgcattta
ggttctgctgattacaggaaaaactttgtaaatgaagtacctgatatgcaagttcccaaa
caagggaggttgccatctcagcagtttgatgacgaatttacccaggagcatcataagtct
gttcgcaatggttctaagaggccatctggatctcctccgaggttaggtaccaagtcaatc
tctcctagctctaattttccaattcgtccaagatccttgccttctgcgcgcaatgatcct
cctcccacagtgagaaacattgggcctcctgtttctaaaagaacgagatcgcctttaatt
taccatgatgactttcttcaggaaagctccactcctattgaagatgatactgagcgagaa
ttgcaagctaaagcaaagcgattagcgcgtttcaaaactgaattgagtgaaactgttgag
acgaaacctccagatattgcagatcaaagattgtctacgactagatttcagcacaatgtg
gaagagaggaagaagcatgttggggaacagcctatggattcatctggggagtccttgaat
gaccttgtttcattcgattttgatggcacagaagcatccagagtcatcattgggttatgt
ccagatatgtgtccggaatcggaaagggcagaaagagaaagaaaaggtgatcttgaccag
tatgaacgtgtggatggtgatagaaatcaaacaagtgaatccctcgctgttaagaagtat
actcggacagctgagagagaagcaagtttgatacggccaatgctagtcctgcagaagaca
atagattatctactcaatttgctggatcagccatatgatgacaggtttcttggaatatat
aactttctatgggataggatgagagcaattcgaatggacctgaggatgcagcacatcttt
gaccaaggggcaatcactatgctagagcaaatgataaggcttcacataattgccatgcat
gaattatgtgaatacaccaaaggcgagggcttctctgagggatttgatgcacatctaaat
atcgagcagatgaacaaaacatcagttgagctattccaaatgtatgatgatcacaggaag
aaaggaattaatgttccaacagaaaaggagttcagaggttattatgcacttctcaaactt
gacaagcatccggggtataaagttgaacctgcagagctgtcactggacctcgctaagatg
actccagagataagacaaactccagaagtgctatttgctcgtaatgtagctagggcttgc
agaacgggtaattttgttgccttctttagactagcgaggaaggcaagctaccttcaagca
tgcttgatgcatgcccattttgcaaagttacgaacccaggcttttgcttctctacactct
agtcttcagaacaaccaaggcctccctatttcccatgttgccgaatggcttgggattgag
gaagaggacatcgaaagcattttagactactatggcttttcaataaaggaatttgaagag
ccatatatggtgaaggacggttcatttcttaatgctgaaaatgactatcctaccaagtgt
tcaagacttgttcatcaaaaaagatctagaacaatagccttggatgttgcaactcctcac
gaagtgacttccttgcccataggagcatcgaaggagagtcaaccaagtaaagcttataaa
caaagggcaaatgtctcaccttctcctaaaaggaagagttctgtttcagcagctgatgaa
gaattgcctgattctaaaggtgttccttctccaaagtctagttcgcaactgcatttggtg
actgagacatcaaaagggttagaacagctcccagaaggtcatctcaagtctggtgcctcc
aaaccgtttaatttctctatggatcgtagttcccctcggtcatttccagcgaaagttgtg
gtcatggagaaatcaaacaatgtcactgtttcctcattgcctgacggaacaaatacttat
ggcatggaacaaatgccaccactaactttttcacaagcatctcagcctgagagatcacct
agtggtagatttcatctctctgtggaaaaccccgtacctcaaagtatggctattattgac
aatgtaaagtcctcaccaatgagatcacctagtggtaaatatacagagaacgcattgcct
caaacgatggatcttaatgacttaaaatctcagtcagagaggccaagtgttaaatatgat
aaagctttggaaaattcagtgcctcaagggatggaaattaatgatttaggagataaacct
ctggatgatcatcaagaaattgagaatcagcaaatagttgcaaatattcagcgcaaggaa
gttgctgaagcaaaactcaagttgatcctgaggttgtggagccgacgtgctgcaaagcaa
agggaattacgggaacaaagacagttagcagctgaagctgcactaagttcattaccactg
ggaataccagttcggcagaacaacgatcaatggagcacatttgatgagcttgattttgat
catgtaatgagtgagagatgcgaaaaatatgaaaggtcatggtcgaggctgaatgtttct
gatgtagtgtcaagtattttgggtcaaagaaacccggatgctaaatgcctatgctggaaa
attattttatgttctccggagagcagtcaaggagagcaaccaaggcagaataaccaggtt
ggccatttggcagcaggcccatggttgttctctaagatcatgccttccacagaagataat
aacgatgatgatttagcaatcacgtctcctggtatgtctatatggaagaaatgggttcct
agcttatgttgtaccgatctaacttgctgcttgtctgttgtgaaagatgcaaattgcgat
aatctggatgaggtcgtatctggagcaaacgcggtattatttattgtatctcagaacatt
ccatggaagctccaaaaggccaaactttatagtcttttgaattcagttcctcctggtgca
tgcttaccgcttctggtcttaagtggttcttataacgtagaagattcagatccttcctcg
gttatagttaatgaattggggctgcatgaaattgacaaatcacgggtaagctgctttttg
gtggttttccttgttggtaagtggcatttttcaaatgggtttttcagtgatgaagagtta
agagaaggactgaagtggttggccgataaatcacctctacaacctgttcttagcagtgtg
aagatgcgcgaacttgtcatgtctcacctgagtccagtgttggaggaacttgataaaatg
ggtgattatgaagtaggtccgaatcactgcatttcagtcttcaatgaagcattggattgg
tcatttggagaaattactgctgctattaaagcaaatcctaccaattggccttgtccagag
gctatgctgctaaaagactttagtgacgaatttttagctgcgaagttgttcctgccaagt
gtggggtggagctcgccagcaaaactgncaccactcgaacacgcattgaaagattgtcga
cttgcccgttttcccgatgatatctcattgctacaaaggggttcaatgatgggaaaagat
attgataaccacagattactacttgaaaattgtttggtagaatacctaacacaatcaaca
aagatgatgggaattccactagctacaaaagagacatccgtgatgatacaaagaaacaca
cggctcgaactccgcaacttgagttattatcttgtgccaaactggatcacgatcttccga
cggattttcaactggcgactttcgagtttatcaaccggggcctgttccttttcatatgta
ttgcagactcatcatgtgcctccattgggagatctacttaagttaccacttgaagtcgac
acttcaccgaattgcttgagtcatccatctttagatgaaatacttgaagttggttgtagt
cccctcgaatctcggaggatcaacttcgatccccaaccttctcaggataaagaagaccat
acttcacagaaaaatggattggccattacaggtgatgttgcttgtactacaagtaaacca
gatagcagttatagtaaaatggtggtggctggaactgaaactgatagattaagccaattg
ttggagaaatgtaacatagtacagaatagtataggtgagaagctttcaatttacttctga
DBGET
integrated database retrieval system
