Gossypium hirsutum (upland cotton): 107929129
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Entry
107929129 CDS
T04793
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107929129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107929129
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107929129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
WDR90_beta-prop_4th
ANAPC4_WD40
PRP4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_SPT8
WD40_like
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
107929129
NCBI-ProteinID:
XP_016715971
UniProt:
A0A1U8LMY9
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Position
D12:complement(1899760..1903790)
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AA seq
560 aa
AA seq
DB search
MEVDDDNGPSTSAAVPDGETTVPTANSTPVQPPAVPPAVVPPTIAPLPAVVPPIAPIPAV
RPPVFKPPVPQNGEVKAVDSDSDHEVDGRATAGEYEISEESRLVRERQEKAMQELLMKRR
AAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRERLRMIMAKLDSEGQLEKLMKAHEE
EEAAISAKAEDIEEDIEYPFYTEGPKELLDARIDIAKYSIVKAAARLQRARRKRDDPDED
MDAEIDWALRQAGNLVLDCSEIGDDRPLSGCSFSRDGKLLATCSLSGVAKLWSMPRVSKV
SALKGHTERATDVTFSPVHDLLATASADRTAKLWSTDGSLLKTFGGHLDRLARIAFHPSG
KYLGTTSFDKTWRLWDIDTGMELLLQEGHSRSVYGIAFHQDGSLVASCGLDALARVWDLR
TGRSILALEGHVKPVLGASFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQV
KFEPQEGYYLVTSSYDMTAKVWSGRDFKPVKSLPGHEAKVTASDISADGRYIVTVSHDRT
IKLWTAGNIEQENDMDWTEG
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgatgatgacaacggtccatcaacttcagctgcagttccggatggcgaaacc
acggtgcctacagctaatagcacaccggttcagcctccagcggtcccacctgcagttgta
cctccaactattgctccactaccggcagttgtgccacctattgctccaatacctgcagtt
cgccctcccgtctttaaaccacctgtgcctcaaaatggtgaggtgaaagctgttgattca
gactctgaccatgaggttgatgggcgagctacagctggtgaatatgagatctcagaagag
agtagactggttcgagagcggcaggaaaaggcaatgcaagaacttttgatgaaacgtcgt
gctgctgcactggcagttcctactaatgacatggctgtccggactcgacttcgccgactt
ggtgaacccataacactttttggagaaagagagatggaaagacgggaaaggctgcgaatg
attatggcaaagctggattctgaggggcaactggagaaattgatgaaagctcacgaggag
gaagaggctgcaatttctgctaaggcagaggacattgaggaagacattgaatatcccttt
tatactgagggtccaaaagagcttctggatgctagaattgatattgcaaagtactctatt
gtaaaggcagctgcacgtcttcagcgtgcacggagaaaaagggatgatccagatgaagat
atggatgctgaaattgattgggctctaaggcaggcagggaatttggttcttgattgcagt
gaaattggtgatgatagaccgctttcgggttgttctttctcacgcgatggaaaacttctt
gccacctgctctttgagtggagttgctaagttgtggtcaatgcctagggtaagcaaggtt
tctgccttaaagggccacacagaacgtgcaactgatgttactttttctccggtgcatgat
cttttagcaactgcttctgctgaccgaactgcaaagttgtggagcactgatggatctctc
ctgaaaacatttgggggccatttggatcgccttgcacgtattgccttccatccttctggg
aagtatcttggtacaacaagctttgataaaacatggagattgtgggacatagacactggc
atggagttgcttctccaagaaggtcatagcaggagcgtctatggaattgccttccaccaa
gatggatctttagtagcatcctgtggacttgatgcacttgctcgtgtttgggatctgcgc
actgggagaagtattctggctttggaaggccatgtgaagccggttcttggtgctagtttt
tcacccaatggctatcatctagccacaggtggtgaagataacacttgtcgtatatgggat
ttgaggaagaaaaagtccctgtatatcataccagcccattcaaatcttatatcacaagtt
aaatttgagcctcaagagggatattacttggtcacttcttcttatgacatgactgcaaag
gtttggtctggaagagattttaagcccgtcaaaagcttaccaggtcatgaagctaaagtc
actgcttcagatattagtgcagatgggcgatatattgtgacagtctctcatgatcgaact
ataaagctatggactgctggtaacattgaacaggaaaatgatatggattggactgagggt
tga
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