Gossypium hirsutum (upland cotton): 107929155
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Entry
107929155 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 13 isoform X1
KO
K14805
ATP-dependent RNA helicase DDX24/MAK5 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107929155
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107929155
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107929155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107929155
NCBI-ProteinID:
XP_040933226
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All DBs
Position
A09:complement(83684745..83690462)
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AA seq
817 aa
AA seq
DB search
MSTPSPPQRQQEEKQSVSLSKKKNQKRKRTKHDPELGRLDSLPWNSSLPNEEEEDDTFSL
FIGSGDLDGGFLSLEEIDESDYGLDVPGAKKKISNKNSKLKKQKLEEVTEGSREDAEAEP
EPEPAEGMAEEKNVKAKKKKKKSKKKKAKAVQQEDESATVIDSKDDEKEQMLYEDEAEAY
AEFYAWNELRLHPLLMKSISRLGFKEPTPIQRTCIPAAAHQGKDVLGAAETGSGKTLAFG
LPIFQRLLEEREKAANMLEEKGEEAGKYAPKGVLRALIITPTRELTLQITDHLKEFAKDI
NVRVVPIVGGMSAEKQERLLKTRPEVIVGTPGRLWELMSGGEKHLVELHSLSFFVLDEAD
RMVEAGHFRELQSIIEMLPMTSGTTEGQSQDTQNCVTVSSLSRKKRQTFVFSATLALSAD
FRKKLKRGSLKSKQSTDGLNSIEILSERAGMKPNAAIVDLTNASILAKNLEESFIECREE
DKDAYLYYILSIHGEGRTIVFCTSIAALRHISSILRILGINVSTLHAQMQQRARLKAIDR
FRANEHGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASSDGCSIALIS
PNDSAKFASLCKSFAKESIKHFPLESSYMPEVMKRLSLACQIDKISRKDSQERANKSWLE
RSAESLELVVENYDSEEERVKNFKQKKASSNHLKKLQQELNGLLSRPLRPKTFSHRYPTA
AGVTHLIQHQFEELAKQNGDDNLVLGENKRRKMVVIGQDCVEPLQALRSAGREVHMDVKE
RVEKRRNAESLRRKRKEEKKRLRDQRRKQKKQSQGRE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccttcaccgccgcaacgacaacaagaagaaaagcagtcggtttcactttca
aagaaaaagaatcaaaagaggaagagaacaaaacatgacccagaactcggacgactcgac
tcactcccttggaactcttctcttcccaacgaagaagaagaagatgacaccttctctctc
ttcattggctctggggacctcgacggaggctttctttcccttgaagagatcgatgaatct
gattatggtttagatgtgcctggagctaagaagaaaatttctaataaaaattcaaaattg
aagaaacaaaaacttgaggaagtcactgagggctctcgtgaagatgctgaagctgaaccc
gaacctgaacccgcagagggaatggcagaggagaagaatgtgaaggccaaaaaaaagaaa
aagaagagtaagaagaaaaaggcaaaggctgttcaacaagaggatgagtctgcaactgtt
attgacagcaaagacgatgagaaagaacagatgctttatgaagatgaagctgaagcttat
gctgaattttatgcatggaatgagttgagacttcaccctctgcttatgaaatcaatatct
cggcttggtttcaaggaacctactcccatacagagaacttgtattcctgctgctgctcat
cagggaaaggatgttcttggtgctgctgagacgggatctgggaaaacactagcctttggc
ctgcccattttccaacgtctcttagaagaaagggaaaaagctgcaaacatgcttgaggag
aagggggaagaagcagggaagtatgctccaaaaggtgttttacgagctcttatcattact
cctactagggaacttacgctccagattacagatcatcttaaggaatttgccaaggatatc
aatgttagagtggttcccattgttggtggcatgtcagcagagaaacaggaacgtctatta
aaaacgaggcctgaggtaattgttggaactccagggagattatgggagcttatgtcaggg
ggagaaaaacatcttgttgagttacattcattatcattctttgtactggacgaggctgat
cggatggttgaagcgggacatttccgagagttacagtccataattgaaatgctccctatg
accagtggtactactgaaggacaatctcaagacacacagaattgtgttacggtttcaagc
ttatcaagaaaaaagagacaaacatttgttttttctgcaactttagcactttctgctgat
tttcgcaagaagctaaagcgtggttcattaaaatccaagcagtccaccgacgggctgaat
tcgattgaaattctctctgagcgagcaggaatgaaacccaatgctgcaattgttgatttg
acaaatgcatcaattttagcaaagaaccttgaggaatcttttattgaatgcagggaagaa
gataaagacgcctatctctattacattttgagtattcacggtgaagggagaacaattgtt
ttctgtacatcgattgcagctttgcgtcatatttcctcaatattgcgcatccttggcatc
aatgtttcaactcttcatgctcagatgcagcagcgagctcggttgaaggccattgaccgt
tttcgtgccaatgaacatggtattcttgttgccactgatgttgcagcaaggggccttgat
attcccggtgttcgaaccgttgtccactatcaacttcctcattcagcagaagtttatgtc
catagaagtggaagaactgctagagcctcttctgatgggtgcagcattgctcttatctca
ccaaatgattctgcaaagtttgcctctctttgcaaatcatttgctaaggaaagcatcaaa
cattttcctttagagagctcttacatgcctgaggtcatgaaacgactatctctagcatgc
caaattgacaagatctcacggaaagactcccaggaaagggcgaataaaagctggttggaa
cggagtgccgagtctttagaattagtagttgagaattacgatagcgaggaggaacgagtg
aagaatttcaagcaaaagaaagccagctctaatcacttaaagaagttacaacaggagctc
aatggattgctttcgcgaccactgcgcccgaaaacattttcacatcgctatccaactgca
gctggtgttacacatcttatacagcatcagtttgaagaattggctaagcaaaatggagat
gacaacttggttttgggtgaaaacaagagacggaagatggtggttatcggtcaagattgc
gtggaaccactccaggcacttcggagtgctggtcgcgaggtgcacatggatgtaaaagag
agggtggaaaaacgaagaaatgccgaaagtttgagaagaaaaaggaaagaggagaagaaa
cgtttacgcgaccagcgcagaaagcagaagaaacaatctcaagggagagagtaa
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