Gossypium hirsutum (upland cotton): 107929465
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Entry
107929465 CDS
T04793
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107929465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107929465
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107929465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_EIPR1
PRP4
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_SPT8
WD40_like
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
107929465
NCBI-ProteinID:
XP_040938358
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Position
A12:complement(1989833..1993976)
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AA seq
560 aa
AA seq
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MEVDDDNSPSTSAAVPDGETPVPTANSTPVQPPAVPPAVVPPTIAPLPAVVPPIAPIPAV
RPPVFKPPVPQNGEVKAVDSDSDHEDDGRATAGEYEISEESRLVRERQEKAMQELLMKRR
AAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRERLRMIMAKLDSEGQLEKLMKAHEE
EEAAISAKAEDIEEDIEYPFYTEGPKELLDARIDIAKYSIVKAAARLQRARRKRDDPDED
MDAEIDWALRQAGNLVLDCSEIGDDRPLSGCSFSRDGKLLATCSLSGVAKLWSMPRVSKV
SALKGHTERATDVTFSPVHDLLATASADRTAKLWSSDGSLLKTFGGHLDRLARIAFHPSG
KYLGTTSFDKTWRLWDIDTGMELLLQEGHSRSVYGIAFHQDGSLVASCGLDALARVWDLR
TGRSILAFEGHVKPVLGASFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQV
KFEPQEGYYLVTSSYDMTAKVWSGRDFKPVKSLPGHEAKVTASDISADGRYIVTVSHDRT
IKLWTAGNIEQENDMDWTEG
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgatgatgacaacagtccatcaacttcagctgcagttccggatggcgaaacc
ccggtgcctacagctaatagcacaccggttcagcctccagcggtcccacctgcagttgta
ccaccaactattgctccactaccagcagttgtgccacctattgctccaatacctgcagtt
cgccctcccgtctttaaaccacctgtgcctcaaaatggtgaggtgaaagctgttgattca
gactctgaccatgaggatgatgggcgagctacagctggtgaatatgagatctcagaagag
agcagactggttcgagagcgacaagaaaaggcaatgcaagaacttttgatgaaacgccgt
gctgctgcactggcagttcctactaatgacatggctgttcggactcgacttcgccgactt
ggtgaacccataacactttttggagaaagagagatggaaagacgggaaaggctgcgaatg
attatggcaaagctggattctgaggggcaactggagaaattgatgaaagctcacgaggag
gaagaggctgcaatttctgctaaggcagaggacattgaggaagacatcgaatatcccttt
tatactgagggtccaaaagagcttctggatgctagaattgatattgcaaagtactctatt
gtaaaggcagctgcacgtcttcagcgtgcacggagaaaaagggatgatccagatgaagat
atggatgctgaaattgattgggctctaaggcaggcagggaatttggttcttgattgcagt
gaaattggtgatgatagaccgctttcgggttgttctttctcacgtgatggaaaacttctt
gccacctgctctttgagtggagttgctaagttgtggtcaatgcctagggtaagcaaggtt
tctgccttaaagggccacacagaacgtgcaactgatgttactttttctccagtgcatgat
cttttagcaactgcttctgctgaccgaactgcaaagttgtggagctctgatggatctctc
ctgaaaacatttgggggccatttggatcgccttgcacgtattgccttccatccttcaggg
aagtatcttggtacaacaagctttgataaaacatggagattgtgggacatagacactggc
atggagttgcttctccaagaaggtcatagcaggagcgtctatggaattgccttccaccaa
gatggatctttagtagcatcctgtggacttgatgcactcgctcgtgtttgggatctccgc
actgggagaagtattctggcttttgaaggccatgtgaagccggttcttggtgctagtttt
tcacccaatggctatcatctagccacaggtggtgaagataacacatgtcgtatttgggat
ttgaggaagaaaaagtccctgtatatcataccagcccactcaaatcttatatcacaagtg
aagtttgagcctcaagagggatattacttggtcacttcttcttatgacatgactgcgaag
gtttggtctggaagagattttaagcctgtcaaaagcttaccgggtcatgaagctaaagtc
actgcttcagatattagtgcagatgggcgatatattgtgacagtctctcatgatcgaact
ataaagctatggactgctggtaacattgaacaggaaaatgatatggattggactgagggt
tga
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