Gossypium hirsutum (upland cotton): 107929538
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Entry
107929538 CDS
T04793
Name
(RefSeq) autophagy-related protein 13a
KO
K08331
autophagy-related protein 13
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
107929538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107929538
03029 Mitochondrial biogenesis [BR:
ghi03029
]
107929538
Membrane trafficking [BR:
ghi04131
]
Autophagy
Autophagosome formation proteins
ULK complex
107929538
Atg1 complex
107929538
Mitochondrial biogenesis [BR:
ghi03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
107929538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
107929538
NCBI-ProteinID:
XP_016716468
UniProt:
A0A1U8LST0
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Position
A12:complement(106237654..106241170)
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AA seq
622 aa
AA seq
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MEMDRESGKLEQIVSQFRSKILHVILDSRVPSLHHHHQLQQQESLSHSRVRKTDKWFNLV
LGDRPPALENLNFSLRNLLDPMVIDIILVHRGSCSSSVDNLYSPSAPAVGPADETVIERW
VVQYDCPRFIATPSGADASVSYKKIYKKSIILLRSLYTQMRLLPAYRIFKQLSSLSQTYN
FDLVYKVSSFSHPFSREEESGMKEYSFAPVEALSGYLSVSVTYRATLSDFNLEPLVSLPP
KIITDYVGSPTTDPMRSFPSSEKGAHATSFPLRGARPPSSSPFQRPHSWSSGFHRGFPST
KTQSLAGSPPAYRTSPKPYDIASTPTDLYGNRIQNQRVSTLQQVTAYDEYKSSPPFSPSA
SPSTPSYLSGANPLLTRHCSETAPVTIPLPLTGRSTRYLSPNSSDPSRHSLPPLSPRSSK
HDASSQESPSGIRSYRKIEALRAGESPSGLSNNYSAQKVVRDSKDDSGRFSALLSSSGSP
HIGFSRSSSRLSFQDDMDDCEFSCPFDVDDVDVSDSSSQNTEGKKASEFTAQSNLVGKKS
QDAAVGILVQMLRTAPPLRQDSSCYSTHSLRTEYEGGVSIASGFFMPRKTADALEELNSY
REMKDLLLSKSGTRVVRQEEMK
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggatcgagaatctgggaaattggagcaaattgtttcccaatttcgttccaag
atcttgcacgttattttggactctagggtcccttctcttcaccaccaccaccagctgcaa
cagcaagaatcgctttctcattctcgggtgagaaagactgacaaatggttcaatttagta
ttaggagaccgtcccccagctctggagaatctcaatttctcccttaggaatctcttggat
cctatggtaatagacataatactggttcaccgtggttcttgttcctcatcggtggacaat
ctttatagtccttcagctccagctgtgggacctgctgatgagactgttatcgaaagatgg
gttgttcaatatgattgcccacgatttattgctactccaagtggtgctgatgcttctgtt
tcttataagaagatttacaagaagtcaatcatacttttgagatcactttacacacaaatg
aggcttctccctgcatatagaatctttaagcagctaagttcattgagccaaacttataat
ttcgatcttgtttacaaggtttcatcatttagtcaccccttctctagggaagaggagagt
ggtatgaaagaatatagttttgcacctgttgaggctctttcaggttacctttctgtgtcg
gtaacctaccgtgcaactctatctgatttcaaccttgagcctttggtgtctttgccacca
aaaattataacagactatgttggcagccctacgacggaccctatgagatcctttccttca
tcagagaagggtgctcatgctacatcctttcctttaagaggagcacgacctccatcttcg
tctccatttcaacgtccacacagctggtctagtggttttcacagaggattcccttctaca
aaaactcaatctcttgcaggatctccacctgcttatcgtacatctcccaagccgtatgat
attgcatctacacctactgatttatatggtaatagaattcaaaatcaaagagtgtcaact
ctacaacaggttactgcttatgatgaatataagtcgtcacccccattctcaccatctgct
tctccatcaactccgtcatacttatctggtgctaatcctttgcttactcgtcattgttct
gagacggctccagtaaccattccacttccactaactggcagaagtactagatatctttct
cccaactcttctgatccaagtaggcattcccttccccctttgtctcctagaagctcaaag
cacgatgcctcatctcaggaatctccttctgggattcggtcatacaggaaaatagaagct
ctaagggcaggagagtctccttctggcttatcgaataattattctgcacagaaggtggtt
agagatagtaaagatgactcgggtcgattctctgcattgttgtcttctagtggatcacct
catattggattctctagaagctctagtagactatctttccaggatgacatggatgattgt
gagttctcttgcccttttgatgttgatgatgtcgatgtatctgattcatccagtcaaaac
acagaggggaaaaaggcttcagaattcactgcacagtcaaatctggttggtaaaaaatca
caagatgctgctgttggcattcttgttcaaatgcttagaacagcaccgcctctccgacaa
gactcgagttgctattcgacacattcattaaggactgaatatgagggaggtgtcagtatc
gcttctggattttttatgccgcgtaaaacggcagatgcgctcgaagagctcaacagctac
agagaaatgaaggatctactactatcgaagagtggaactcgggttgttcggcaagaggaa
atgaagtag
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