KEGG   Gossypium hirsutum (upland cotton): 107929601
Entry
107929601         CDS       T04793                                 
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC2A
  KO
K11982  E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ghi04131]
    107929601
   04121 Ubiquitin system [BR:ghi04121]
    107929601
Enzymes [BR:ghi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     107929601
Membrane trafficking [BR:ghi04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab associated proteins
    107929601
Ubiquitin system [BR:ghi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    107929601
SSDB
Motif
Pfam: DUF1117 Zn_ribbon_19 zf-RING_2 zf-C3HC4_2 zf-rbx1 zf-RING_11 zf-C3HC4 zf-RING_UBOX zf-C3HC4_3 zf-ANAPC11 zf-RING_5 FAR1_N Zn_ribbon_RPAB4 zf_RING_Vps8 Prok-RING_4 zf-RING_16 DUF7129 zf-HC5HC2H zf-HC5HC2H_2 Zn_ribbon_HMPTM FYDLN_acid DUF7836
Other DBs
NCBI-GeneID: 107929601
NCBI-ProteinID: XP_016716576
UniProt: A0A1U8LPQ8
LinkDB
Position
A13:complement(2260747..2262254)
AA seq 361 aa
MATTTSYWCYQCNRFFLISNEDPITCPDCDGGFVEEIDNMPHAARAFHADSRLVGGDGFT
AMYNSTTTLRRSRMNGGDRSPFNPVIVLASPSGESTNVEQSGRGFELYYDDGGGLGLRPL
PASMSEFLLGPGFDRLIEQLSQMEIQNIGRHNQPPASKAAVEAMPMVEIDDTHINNELFC
AVCKEQFDLGTKVLNMPCNHLYHSNCLLPWLRLRNSCPVCRHELPAAIGEEGDGSSNSLD
ETPMGLTIWRLPGGGFAVGRFSAGENREFPVVYTEMDGGFSGGLVPRRVSWGSGGRERGG
YLRRVLRNMFGCFSGSSSSPRLDSRISSSSRSYSLFSPPSRRRGWALELDNARSRSRRRR
R
NT seq 1086 nt   +upstreamnt  +downstreamnt
atggcaacgacgacgtcgtattggtgttaccaatgcaatcggttcttcttgatttccaac
gaagatccgatcacttgccccgactgtgacggcggattcgtcgaagagatcgataacatg
cctcatgcagcgcgtgctttccacgctgactcccgtctcgtcggcggcgatggattcacc
gcgatgtacaatagcacaactaccctccgtcgaagccggatgaacggtggcgatcgttct
ccttttaatcccgtcattgttttagcgtcaccttccggggaaagtacaaatgttgaacag
agtgggagggggtttgagctttattatgacgacggaggtggattgggtttgcggccttta
ccggcgagtatgtcggagtttctgttaggtcctgggtttgaccggttaattgagcagtta
tcacaaatggaaatccaaaacattgggcgtcacaaccaaccgccggcgtcgaaagcggcg
gttgaagcaatgccaatggtggaaatagacgatacccatatcaacaacgaactgttctgt
gcggtatgcaaagaacaattcgacttaggaaccaaagttttaaacatgccttgtaaccat
ttgtaccattcaaactgtttactcccttggcttcgattgcgaaattcatgccccgtttgc
cgccatgaattgccggcagctataggggaagaaggggacgggagttcaaattcattggat
gagacccccatggggttgaccatttggagattaccgggtggtgggttcgcggtggggagg
ttttcagctggagagaatagagagtttcccgttgtttatacggaaatggatggtggtttt
agcggagggttggtgccgcggagggtttcatgggggagtggaggtagggaaagaggaggg
tatcttagaagggtgttgcggaatatgtttgggtgttttagtggttcaagttcttctcct
aggttggattcaaggataagtagtagtagtagatcatattccctgtttagtcctccttca
aggagaagaggttgggctcttgaacttgataatgcaagatctagaagtaggagaagaaga
aggtaa

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