Gossypium hirsutum (upland cotton): 107929783
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Entry
107929783 CDS
T04793
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ghi04812
]
107929783
Cytoskeleton proteins [BR:
ghi04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
107929783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_SCAP
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_IFT140_1st
eIF2A
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_RIG_1st
Beta-prop_VPS8
PROPPIN
Beta-prop_DCAF12
Beta-prop_WDR19_1st
VPS8_N
Motif
Other DBs
NCBI-GeneID:
107929783
NCBI-ProteinID:
XP_016716780
UniProt:
A0A1U8LQF3
LinkDB
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Position
A12:1484610..1492055
Genome browser
AA seq
856 aa
AA seq
DB search
MTTKRAYKLQEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS
GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
LDTNLKVWDIRKKGCIHTYKGHNRGVNAIRFTPDGRWVVSGGEDNIVKVWDLTAGKLLHD
FKSHEGQIQGLDFHPNEFLLATGSADRTVKFWDLETFELIGSTGPETTGVRCLTFNPDGR
TVLCGLHESLKVFSWEPIRCHDSVDVGWSRLSDLTVHEGKLLGCSYNQSCVGVWVVDISR
IDPHAVPDANCVNSHSEPKSSSGGNPTVLNENTTKASMGRLSVSQISDTLVKETKSLGRL
SISQNSDPAKESKNLASTGNVPDTPQRVNLNTAPKTTQPSSVTVPSGAAPKRSSMRTSSF
VNAPNFNKLDVIPVIVPRNDMRLEQAVESRKEVGISGRSLEQAAESRREVGIAGRSLEPS
QPAAESRKETGPAGRTLELGTDPKKELGIVGRTMPFSLQSKTSSFRKFQNNREDMDQPAI
SAPSEGAGSKVDGFSSVLDKIIFPSVKSPMKGMPVAERNTREDMCVGSGKSEPNSVVELP
PNYWDENYSQVKRTHRDAYPLESQKGGRTHVVINLEKRGKPSNCDRPNFGISPGNASVSN
MSSFNSYKQRGYHPSVEIEMPSASDEDAVADVMEQHDQFIGSMQSHLAKLQVVHRYWERN
DIKGAISAMEKMADHAVLADVLSIVTEKIDIVTLDICTCLLPLLSSLLGSEMDRHLCICL
DVLLKLVRVFGPMIYSTLSASTPVGVDIEAEQRFERCNLCFVELEKVKRCLPSVTRRGGS
VAKSAQELNLAFQEVS
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgactaccaaacgcgcgtacaagctacaggaatttgtggcacactcttcaagtgtgaat
tgcctgaagattggaagaaaatcgtctagggttcttgtgactggaggtgaagatcacaag
gttaatctctgggctattggaaaacccaacgccatactgagtttgtcaggacacacgagt
ggaatagattcagtgagctttgattcttcagaagtcttggtagctgcaggtgctgcaagt
ggcactatcaagctttgggatttggaggaggcaaaaattgttcggactttgactggtcat
agatccaattgcatctctgtggacttccatccctttggtgagttttttgcatctggttct
cttgatacaaatctcaaggtgtgggatatcagaaagaaaggatgtatccacacgtacaag
ggccataatcgaggagtcaatgcaatcaggtttacaccagatggccgatgggttgtatct
ggcggcgaggacaacattgtgaaggtttgggatttgactgctggaaaactgttgcatgat
ttcaagtctcatgaaggccaaattcagggcttagattttcatcccaatgagtttctactg
gctacaggttcagctgaccggactgttaaattttgggacctagaaacctttgagcttatt
ggttcaactgggcctgagactactggagtccgttgcttgaccttcaaccctgatgggagg
actgtactctgtggattacatgaaagtctgaaggttttctcatgggaaccaataagatgt
catgatagtgtggatgtggggtggtctagattgtcagatcttactgttcatgaaggaaag
cttcttggctgctcctataatcaaagctgtgttggcgtttgggttgtggacatctcgcgc
atagatcctcatgctgttcctgatgctaattgtgtgaatagtcattctgagccgaaatct
agttctggtggaaaccctactgtactgaatgagaacacgaccaaagctagtatgggaagg
ttatcagtttcacaaatttctgatactttagtgaaggaaacgaaatcccttgggaggtta
tccatttcgcaaaactcagatcctgctaaggagtcaaaaaatttggcatccacaggaaat
gtgcctgatacccctcagagagtcaatttaaacactgctcctaagacaactcaaccaagt
tcagtaacagttcctagtggagcagctccaaagaggagttccatgaggactagttcattt
gtcaatgctccaaattttaacaagttagatgtcatacctgtgattgtgcctagaaatgat
atgaggttggagcaggctgttgaatcaagaaaagaagttggaatatcggggagaagtttg
gaacaggctgccgaatctagaagagaagttggaatagctgggagaagtttggagccgagc
cagccagctgctgaatctagaaaagaaactggaccagctgggagaactttggagctagga
actgatcctaaaaaagaactgggtattgttggaagaacaatgccattttctttgcagtca
aagacctctagttttcggaaatttcaaaataacagagaagacatggatcagccagctatc
tctgctccttctgaaggtgcaggttcaaaggtggatggattcagcagtgttctggacaag
attatatttccttctgtcaaaagccctatgaaaggaatgcctgttgctgaaaggaataca
agagaagatatgtgtgttggctctggtaagagtgaaccaaactcagtggtggagttgcct
ccaaactactgggatgaaaattattcacaagtgaaaagaacacatagagatgcatatcct
ttagaaagccaaaaaggaggaagaacacatgtagtcataaatttggagaaaagagggaag
ccttcaaattgtgatagacctaattttggtatatctccagggaatgcatctgtgtcaaat
atgtcttcattcaattcgtataaacaaagaggataccatccctctgtcgaaatagaaatg
ccttctgccagtgatgaggatgctgttgcagatgtaatggagcagcatgaccaattcatt
ggttccatgcagtctcatttagccaagttacaggttgttcatcgctactgggaaaggaat
gacataaagggtgcaatcagtgcaatggaaaagatggctgatcatgctgtgcttgctgac
gtcttgagcattgtcactgagaaaatagacattgtcacattggacatttgcacttgtctt
ctgcccctcctgtctagtctccttggaagtgagatggataggcatttgtgcatttgtctt
gacgtgctgcttaagctggtcagagtatttggtccaatgatatattcaacattatctgct
tcaacacctgttggtgtagacatcgaggcggagcaaaggtttgaacgttgcaacctctgc
tttgtagaacttgaaaaagtaaagcgatgtctcccctcagttactagaagagggggatcg
gtggcaaagtctgcccaggaattgaatctagcatttcaagaagtgtcataa
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