Gossypium hirsutum (upland cotton): 107930222
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Entry
107930222 CDS
T04793
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107930222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107930222
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107930222
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
107930222
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
107930222
NCBI-ProteinID:
XP_040932915
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Position
A09:complement(78860672..78863403)
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AA seq
338 aa
AA seq
DB search
MEYDNIECVSSIDGLNEDEIHHHNLHHPNPHHGHHPFSSSKPHNATNNANNSNMVNNIVG
ATGITPATSVHELLECPVCTNSMYPPIHQCQNGHTLCSTCKARVHNQCPTCRSELGDIRC
LALEKVAESLELPCKYYNLGCPEIFPYYSKLKHEAACNFRPYNCPYAGSECSVVGDIPFL
VAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHSFGQYFCLHFEAFQLGMAP
VYMAFLRFMGDEAEARNYSYSLEVGANGRKLTWEGTPRSIRDSHRKVRDSHDGLIIQRNM
ALFFSGGDRKELKLRVTGRVWKEQQNPDAGPCIQNLCS
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgataatatagaatgtgtgtcatccatagatggattgaatgaggatgagatc
catcaccataatctgcatcatccgaatcctcatcatggtcaccatccattctcatcttca
aagcctcacaatgccaccaacaacgccaacaatagtaatatggtcaacaatattgtgggt
gctaccgggatcactcccgctaccagcgttcatgaattgttagaatgccctgtttgtacc
aattctatgtacccaccaatccatcagtgccaaaatggacatacactttgttctacctgt
aaagcaagagtacacaaccagtgccccacatgtagatcagaactgggtgacattagatgt
ttagcgttggagaaggtggctgagtcccttgaattgccatgcaaatactacaatttggga
tgccctgaaatctttccctattacagcaaactcaaacatgaggcagcttgcaattttaga
ccatacaattgcccgtatgccggatcagagtgttcagttgttggggatattcccttcctg
gttgcccatctgagagatgatcacaaagtggacatgcacactggatgcacatttaaccat
cgttatgtgaagtccaatccccgagaagtcgaaaatgctacttggatgctaacagtcttc
cattcttttggtcagtatttctgccttcactttgaagcattccagctcggcatggcccca
gtctacatggcatttcttcgtttcatgggcgatgaggccgaggctaggaactatagctac
agccttgaggttggagcaaatggccgaaaacttacatgggaaggtaccccacgtagcatc
cgtgatagtcaccggaaagtcagggacagccatgatggtctgattatccagcgaaacatg
gcacttttcttctctggcggggaccggaaggagctaaagctgagggtcaccggaagggta
tggaaggaacaacaaaatcccgacgccggaccgtgcattcaaaatttgtgtagttga
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