Gossypium hirsutum (upland cotton): 107930362
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Entry
107930362 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic-like isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107930362
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107930362
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107930362
Membrane trafficking [BR:
ghi04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
107930362
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
EXOC6_Sec15_N
Motif
Other DBs
NCBI-GeneID:
107930362
NCBI-ProteinID:
XP_016717481
UniProt:
A0A1U8LSC7
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Position
D10:376921..387327
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AA seq
992 aa
AA seq
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MDLQPSPSGRSSTVGRTSSFSVADSGGQTLSSVLNNPHAGKLEASWGWWSVAPPEFTPLT
STKAACDLTRSDFQSYVSSISDSYYRFEDIRNHTTKEQTLDVDNIGEALVACLREVPALY
FKEDFALEDGGTFRAACPFTDVSENIILQEKLSHYLDVVELHLVKEISLRSNSFFEAQGQ
LQDLNVKIVEGCNRIRDLKETIRLVDTDLVDSARQIQELNASRTNLLALQHKLKLILSVN
QALSALKLLVASSECAGALDIIDDLQHLLDGDELSGLHCFRHLRDHVVTSIDSINSILSA
EFMRASIHDKGDKDSVILLKAKARASISLNGEDVGQVNLDEEETTNFRDRLLPLIIGLLR
TAKLPFVLRTYRDTLTADMKTAIKTAVAELLPVLVGQPLESDMGAERTVDADGGGLSLAS
KLRSLSSGSFVQLLAAIFKIVQAHLVRAAEVKRAIEWVMCNLDGHYAADSVAAAIALGAM
VAESSQESNGQGGALPLSASLRSTSKVLSSPGKGSDAISPSNLSKNFRADVLRENAEAVF
AACDAAHGRWAKLLGVRALLHPKLRLQDFLSIYNITQEFITSTEKIGGRLGYSIRGTLQS
QAKSFVDFQHESRMTKIRAVLDQETWVEVDVPDEFQAIVSSLFDSEAIVSGSKDNAESNR
TESYSNEGSQVGSVAQNEPTDSSSTTAVNAAQGKAEVIERKKSDAVTSSQSNNSNTKERG
KNATQTLECGGVSYHMVNCGLILLKMLSEYIDMNHLLPALSLEVVHRVVEILKFFNTRTC
QLVLGAGAMQVSGLKSITSKHLALASQVISFIYAIIPELRQILFLKVPEPRKSLLLSEFD
RVAQDYKVHRDEIHTKLVQIMRERLLVHLRGLPQIVESWNRPEEADPQPSQFARSLTKEV
GFLQRVLSRTLHEVDVQAIFRQVVVIFHSQISDAFSRLEISTPQAKDRLYRDVTHILGCI
RSLPSDNSNNSATPNWGQLDEFLAQRFGAEAS
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggatctacagccttccccatcgggaaggtcatcgacagttggtcggacctcttcattt
tccgtcgccgattcgggtggccaaacgctttcttcggtccttaacaaccctcatgctggc
aaattggaagcttcttggggttggtggtcggtcgcgccgcctgaattcactcctttgacg
tccaccaaagcggcttgcgaccttacccgatccgacttccaatcatacgtctcttccatc
tccgattcctattatcgattcgaggatattaggaatcacaccaccaaggagcagactctc
gatgtcgataacattggggaagccctcgtagcttgtttaagggaggttcccgccctttat
tttaaggaagatttcgcgctcgaagatggggggaccttccgggcagcctgcccttttact
gatgtttctgaaaacattatacttcaggagaaattgtcccattacttggatgttgtggag
cttcatttggtgaaggagatttcgttgcgctccaattctttcttcgaagcgcaagggcag
ttgcaggacttgaatgttaagattgtggaaggatgcaatcggattcgtgatttgaaggaa
actattcggctcgtagacactgatttggttgactctgctaggcagattcaggagttgaat
gcctctaggaccaatttgttggctctccaacataaattgaagcttattctatctgttaac
caagccttatccgctcttaaattgcttgttgcatcttcagagtgtgctggagctttggat
attatcgatgatctgcaacacttactggatggggatgagctttctggtttacattgcttt
cgtcaccttcgagatcacgtagtcacttctatagattccataaacagtattctttcagca
gaatttatgcgtgcttcaatacatgataagggggataaagattcagttatattgttgaaa
gcaaaagccagggcatccatttccttgaatggcgaggatgttggacaggttaacttggat
gaggaagaaaccaccaattttcgagatcgtcttctgcctcttattattggtttgcttcga
actgccaagctcccatttgtcctaaggacatatcgtgatacacttactgctgatatgaaa
actgctattaagactgctgttgcagagctgcttccggttctggtgggccaacctctggaa
tctgatatgggtgcagagcgcactgtcgatgcagatggtggaggcttatcacttgctagc
aaattaaggagtttgtcatctggaagctttgtccaacttctggctgctattttcaagatt
gtacaggcacatttagtccgggcagctgaagtgaaaagggccattgagtgggtaatgtgc
aaccttgatggtcattatgctgctgattcagtcgctgctgcaattgcacttggtgccatg
gttgcagaatcttctcaagagagtaacggtcaaggtggtgcacttcctctgagtgcatct
ttaaggagtacatccaaggttctttcatccccagggaaaggaagtgatgcgataagcccc
tcaaatttatcaaagaattttagggcggatgttctgagagaaaatgctgaagcggtcttt
gcagcttgtgatgctgctcatggaagatgggcaaagctgcttggcgttcgtgctcttctt
catcctaagctaagattgcaagactttctgagcatatataatatcactcaggagtttata
acttctacagagaagattggtggaaggttgggatatagcatcaggggaacactgcagtcg
caggctaaatccttcgttgatttccagcatgaatctcgaatgacaaaaatacgagcagtg
cttgatcaagagacatgggtagaagtagatgttcctgatgaatttcaggctattgtttct
tcactgtttgattctgaagcaatagtttctggaagcaaggataatgctgaaagtaatagg
acagaaagctacagcaatgagggttcacaagtaggttctgtggcgcagaatgaaccaact
gattctagtagcacaactgcggtaaatgctgcccaagggaaggctgaggtgattgagaga
aagaaatctgatgcagtaacttcatctcagagtaataacagtaatacaaaggaacgtgga
aaaaatgctactcaaacacttgaatgtggcggtgttagttatcacatggttaactgtggc
ttaatattgctgaagatgctgtcagagtacattgacatgaatcatcttctgccagcacta
tccttggaggtggttcatcgtgttgtggagattctaaaatttttcaacacgagaacatgc
caacttgttttaggtgctggagccatgcaggtttctggtttgaagtccattacttctaaa
cacttggccttggcaagtcaagtcattagtttcatatatgctatcattcctgaattgagg
caaatcctgttcctcaaagttcctgaacctcgaaagtcacttttgctgtcagagtttgat
cgagttgcccaggattataaggttcaccgggatgaaattcatacaaagcttgttcagata
atgagagagaggttgttggttcatctgcgtggactaccccagattgttgagagctggaat
agaccagaagaagctgacccacagcccagtcaatttgctaggtctctcactaaggaagtt
gggttcctccaacgagttttatctcgtacattgcatgaagtagacgttcaagcaattttc
aggcaagttgttgtaatcttccattcacaaatttcagatgcattttcacgcttagagatc
agcactccccaggcaaaagatagactgtaccgcgatgttacacacattcttggatgcatt
cgatcattgccttctgataattcgaataactctgctaccccaaactgggggcaactggat
gagttcttagcacaaaggttcggggccgaagccagttga
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