Gossypium hirsutum (upland cotton): 107930383
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Entry
107930383 CDS
T04793
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107930383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107930383
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107930383
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Step II factors
107930383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
GIPC1_GH2
Cas3-like_C_2
AAA_30
nSTAND3
AAA_16
CDC45
TsaE
ABC_tran
Sigma54_activ_2
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
107930383
NCBI-ProteinID:
XP_016717521
UniProt:
A0A1U8LSG5
LinkDB
All DBs
Position
D10:complement(597486..602539)
Genome browser
AA seq
1180 aa
AA seq
DB search
MASSPAQDDALKKLEYLSLVSKVNSELESHVGFADKVLAEFITDMGRHSNTVDEFDAKLK
ENGAELPDYFVRTLLTIIHAILPPKPKAADKDSKAENTGDGKKSKFKALAIADDKDRAKE
LEEEIEMEMRDRKDKDRDRDRDRDRDRDRDRDRGRDRSRHRDRYKEEEEEDRRDYGIRGR
NRNRTRDNEDDRDYRNRGRNRDRDNVERDEDGGRRSNGKYRDNEPELYKVYKGRVSRVMD
SGCFVQLNELRGKEGLVHVSQMASRRIPNAKDVVKRDQEVYVKVISISGQKLSLSMRDVD
QNTGRDLLPLKKSSDDDAFRTNPSGGKEGPVTRTGLSGIRILEDEDAAPSRRPLKRMSSP
ERWEAKQLIASGVLSLDEYPMYDEDGDGMLYQEEGAEEELEIEMNEDEPAFLQGQTRYSV
DMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETG
ERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIYKLKKELVQAV
HDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRL
GEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLF
GLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLD
AALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPS
EMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVVDPGFAKQNVYNPKQGLDSLIITP
ISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGTITLQMKAMGIN
DLLSFDFMDPPPPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVD
LGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFS
GPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARK
DPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAP
RFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcgcctgcccaggacgatgctttgaagaaactcgaatatctctctctcgtc
tccaaagtcaattccgagctcgagagccatgttgggtttgccgataaggttttggccgaa
ttcatcaccgacatgggccgtcactctaacactgtcgatgaattcgatgccaagctcaaa
gaaaacggtgccgagttgcccgattacttcgttcgcacgcttctcactattatccacgcg
atcctgcctccgaaacccaaagccgccgacaaggattccaaggcggaaaacaccggtgac
ggtaagaagtctaaatttaaagctttagcgattgctgatgataaggatagagccaaagaa
ctagaggaggaaattgagatggagatgcgagataggaaggataaggatagggatagggat
agggatagggatagggatagggatagggatagagataggggcagagataggagtaggcat
agagatagatataaggaggaggaggaggaggataggagggattatggcattcgaggaaga
aataggaatcgaacccgggataatgaggatgacagggattataggaataggggcagaaac
agggaccgggataatgtagaacgtgatgaagatgggggaaggaggagtaatgggaagtat
agggataatgagcctgaattgtataaggtatacaaggggagggtttcgagagtgatggat
tcgggttgtttcgttcagttgaatgagttaaggggaaaggagggtttggttcatgtttcc
cagatggctagtagaaggattcccaatgctaaagatgttgtgaaacgggatcaggaggtt
tatgtgaaggtaatttcgatttcaggtcagaagttgagtttgtctatgagagatgttgat
cagaatactggtagagatttgctgccattgaagaagagttcagatgatgatgcctttaga
accaatccttcaggggggaaagaagggcctgtgacaagaactggtctttcagggattagg
attctagaggatgaggatgctgccccatcgcgtaggcctttgaagagaatgagttcaccg
gagaggtgggaagccaaacagttgattgcttctggtgttttgagcctagatgagtatccc
atgtatgacgaggacggagatggaatgctttatcaagaagagggtgccgaggaagagttg
gagattgagatgaatgaggatgaacctgcctttttacaagggcagactaggtactctgtc
gatatgtcaccggtaaaaatatttaaaaatccagaagggtccttgagtcgtgccgctgct
ctccagtctgcacttattaaggaacggagagaagtacgagagcagcagcagaggacaatg
ctggattcaattccaaaggatcttaatcgtccttgggaagacccaatgccagagactggt
gagaggcatcttgcgcaggagcttagaggtgttggattgtcagcatatgatatgcctgaa
tggaagaaggatgcttatggaaaagctttgacttttggacagaggtctaaactttcaatt
caagagcagaggcagagccttcccatttataaactgaaaaaagaactcgttcaagctgtg
catgataatcaggtactggtggtcattggtgagactggttcaggtaagactacacaggta
acccagtaccttgctgaggctgggtacactacaaggggtaagatcggatgtactcaacct
cgtagggtggctgcaatgtctgtggcgaagagggtagctgaggaatttggttgtcggtta
ggggaggaagttggttatgctattcgttttgaagattgtactggaccagatactgtcatc
aagtacatgactgacggcatgcttctaagggagattctgattgatgagaatctttctcaa
tactcggtcattatgcttgatgaagcacatgagcgtacaattcatactgatgtccttttt
gggttattgaagcagcttgtgaaacggaggcctgatcttcgtctgattgttacatctgct
acactggatgcagagaagttttcagggtatttcttcaactgtaatattttcacaattcct
gggagaacgtttcctgtggagatactctatacgaaacagcctgagagtgactacctagat
gctgctttgataacagtcctgcagatacacttgactgaacctgaaggtgacattctcctc
ttcttgactggtcaggaggaaattgattttgcatgccagtctctttacgagaggatgaaa
gggctaggtaaaaatgttccagagttgattattttaccagtttatagtgcccttcctagt
gaaatgcagtctaggattttcgatcctgcacctccagggaaaaggaaggtggtggtggca
accaatattgctgaggcttctttaactatagatggaatattctacgtggttgatcctggt
tttgcaaaacaaaatgtttataatccaaagcaagggcttgattccctaatcataacacca
atctcacaagcatcagcaaagcaacgtgctgggcgtgctggacgtactggacctggaaaa
tgctaccgcttatacactgaaagtgcatatcgaaatgagatgtcacctaccacaattcct
gaaatccagaggattaatcttggcacgataacactacaaatgaaggccatgggcataaat
gatctcctttcttttgattttatggatccccctccaccccaagctctcatttctgccatg
gagcaattatacagtctaggggctcttgatgaggagggacttttgactaaattgggtaga
aaaatggcagaatttcctcttgatcctccactatccaagatgttactggccagcgtggac
ctcgggtgtagtgatgagatattgacaattattgcaatgatccaaacaggtaacatcttc
tacaggccaagggaaaagcaagctcaggctgatcagaagagggccaagtttttccagcct
gaaggagatcatttgactctacttgctgtatatgaagcttggaaagcaaagaacttttca
ggaccttggtgttttgaaaattttgttcagtctagatccttgaggagggcacaggatgtc
agaaaacagcttctcagcatcatggataagtacaaattggatgtagtgagcgccggaaag
aactttacaaagatcaggaaagctatcacggcagggttctttttccatgctgctaggaaa
gacccgcaggaaggatatagaacactggtggagaaccagcctgtttatatacacccaagc
agcgccctgtttcagagacaaccggactgggtgatctaccatgagctggtaatgactaca
aaggagtacatgcgagaggtaacagtggtagatcccaagtggctggttgaactggctccc
aggttctttaaagtagcagatcccacgaaaatgagcaagcggaagcgtcaagaacgaatt
gaaccactttatgatagatatcatgaacctaattcttggcggcttagtaaacgacgagct
tga
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