Gossypium hirsutum (upland cotton): 107930406
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Entry
107930406 CDS
T04793
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107930406
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107930406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107930406
04121 Ubiquitin system [BR:
ghi04121
]
107930406
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107930406
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107930406
Spliceosome [BR:
ghi03041
]
Complex B
Other components
Prp19 complex
107930406
Complex C
Prp19-CDC5 complex
107930406
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
U-box type E3
107930406
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
107930406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_SPT8
NBCH_WD40
PROPPIN
Beta-prop_DCAF4
Beta-prop_WDR41
U-box
Beta-prop_Aladin
PEP5_VPS11_N
Beta-prop_RIG_2nd
zf-Nse
WD40_like
WDR54
Beta-prop_ACSF4
Beta-prop_WDR35_TULP_N
PAS_11
V_ATPase_I_N
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
107930406
NCBI-ProteinID:
XP_016717553
UniProt:
A0A1U8LVU7
LinkDB
All DBs
Position
A09:complement(83484955..83490609)
Genome browser
AA seq
524 aa
AA seq
DB search
MNCSISGEVPEEPVVSTKSGLLYEKRLIERHISDYGKCPVTGEALTMDDIVPVKTGKIVK
PRSLTAASIPGMLGMFQNEWDALMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQAPLPASAATANVSALSNGKRAAESEDMGPGGKRMRPGVSDSIIAE
LTECNAALSQQRKKRQIPPTLAPIDALERYTQLSSHPLHKTNKPGITSIDINFSKDIVAT
GGVDSSAVLFDRTSGEILSTLSGHSKKVTSVKFVAQNDVFLSGSADKTVRIWQGSEDGKY
DCRHILKDHTAEVQAVTVHATNNYFVTASLDMTWCFYDLSSGLCLTQVEDPSNSMGYTSA
AFHPDGLILGTGTTGATVRIWDVKSRGNVANFDGHTGAVTAISFSENGYFLATAAHDGVK
LWDLRKLKNFRSFELYDQDTPTNSVDFDHSGSYLAIAGSDIRVFQVGSVKAEWNCIKTLP
DLSGTGKSTCVKFGPDAKYLAVGSMDRNLRIFGLPEGDDASTES
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatctccggtgaggtgccggaggagcccgttgtctccacgaaatccggc
ttgctctacgagaaacgcttaatcgagcgtcatatttcggattatgggaagtgtccagtt
actggggaggcacttactatggacgacattgtcccggtcaaaaccggcaagattgtgaag
cccagatctttaacagcagctagcattcctgggatgcttggaatgtttcagaatgaatgg
gatgctttaatgctatccaattttgcattggagcagcagcttcataccgccaggcaagag
ttaagtcatgcactctaccagcatgatgctgcctgccgtgtgattgcaagacttaaaaag
gaaagggacgaagccaggtcattgctcgcacaggctgagaggcaggcaccgttgcctgca
tcagcagctactgccaatgtttctgctctcagcaatggaaagagagctgcagagagtgaa
gatatgggccctggtggaaagagaatgcgtcctggggtttctgatagtattattgctgag
ttaacagaatgtaatgcagctctgtcacaacagcgtaaaaagcgccagatacctcccact
ttagctcccattgatgctttggagaggtatacccaactatctagtcatcctcttcacaag
actaacaaacctggaatcacttcaattgatatcaatttttcaaaggatattgttgccact
ggaggggttgattcaagtgctgtactctttgatcgaacatctggagagatcttatctaca
ctcagtgggcattctaagaaggttactagtgtaaaatttgtagcccagaatgatgtattt
ttaagtggttcagcagataagactgttcggatttggcaagggtctgaagatggaaagtat
gattgcaggcatattttgaaagatcatacagctgaggtgcaagctgtcacggtccatgcc
actaacaactactttgtaactgcttcacttgacatgacgtggtgtttttatgatctttcg
tctggtttatgcttgacccaggttgaagacccatcaaattctatgggctatacgtctgca
gcttttcatcctgatggccttatccttggaactggcaccactggagctactgttagaatt
tgggatgtgaagagtcggggaaatgttgccaactttgatggacacactggggctgtaaca
gccatatctttctcagaaaacggttacttccttgcgactgctgctcatgatggtgttaag
ttgtgggatctacgcaaattgaagaactttcgatcttttgaattatatgatcaagacaca
ccaaccaactcagtggatttcgaccatagtgggagttaccttgcaattgctggctcagat
ataagagttttccaagttggcagcgtaaaagctgaatggaattgcatcaaaactttacct
gatctgtccggcacaggtaaatcaacttgtgtcaaatttggtccagatgcaaagtacttg
gcagtgggatcaatggatcgcaaccttcgcatatttggccttcccgaaggtgatgatgct
tcaacagaatcataa
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