Gossypium hirsutum (upland cotton): 107930495
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Entry
107930495 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107930495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107930495
03036 Chromosome and associated proteins [BR:
ghi03036
]
107930495
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107930495
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107930495
mRNA degradation factors
5'-3' decay
Decapping complex
107930495
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107930495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Aldedh
Motif
Other DBs
NCBI-GeneID:
107930495
NCBI-ProteinID:
XP_040931600
LinkDB
All DBs
Position
A08:complement(4197474..4203610)
Genome browser
AA seq
492 aa
AA seq
DB search
MNSRGRYPPAIGVGRGGGLNSNPGFQSRPPQQNYMQRNFVQNHHQFHNQHQHQQQRQQQW
LRRNQLPGTNDSSVVDEVEKTIQSEAFDSSSQDWKARLKMPPPDTRYKTEDVTATKGNEF
EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKI
DQDKNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLL
VGTPGRILDLAKKGVCILKDCSMLIMDEADKLLSPEFQPSIEQLIRFLSAKRQILMFSAT
FPVTVKDFKDRYLQKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSII
FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID
IQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ
IPPHIDQAIYCR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtagaggaaggtatccaccggcgatcggcgttggccgcggcggcggactaaac
tcgaaccctggttttcagtcgaggccgccacaacagaactacatgcagaggaattttgtg
cagaatcaccaccagtttcacaaccaacatcaacatcagcaacaacgacagcagcagtgg
cttaggcgaaaccagttgcccggaaccaatgactccagtgtcgtcgacgaggttgagaag
accatacaatccgaagccttcgactcaagttcacaagattggaaggcaaggctaaagatg
ccaccaccagatactcgctacaaaacagaggatgtgacagctacaaagggaaatgagttt
gaggactactttttgaaacgtgaacttcttatgggaatatatgagaagggttttgaaaga
ccttcacctattcaggaagagagtattcccattgctttaactggaagtgatattcttgcc
agagccaaaaacggaactgggaagacagcagcattctgcattcctgccttggaaaaaatt
gaccaagataagaatgttattcaagttgttatacttgttccaacacgagaactggctctt
cagacatcacaagtgtgcaaggagcttggaaagcatttacaaattcaagtcatggttaca
acaggaggtaccagtctcaaggatgatatcatgcgattgtatcaaccagtccatttgctg
gttggaacccccggcagaatactagaccttgctaaaaagggtgtttgcattttgaaagat
tgttcaatgcttatcatggatgaggcagataaacttttgtctcctgaatttcaaccttct
atagagcagctgatacgtttcctttcagcaaagcgccaaattttgatgttttccgccaca
tttcctgttactgtgaaggactttaaagacagatatctacaaaaaccttatattattaat
ctaatggatgaacttactttaaagggtattacgcaatattatgcttttgtggaagaaaga
cagaaagtccactgcttaaatactcttttctctaagctgcaaataaaccaatcaatcatt
ttctgcaactcggtaaatcgagtggagttgttggccaagaaaattacagaacttggctat
tcttgcttttatatccatgcaaagatgcttcaggaccaccgtaacagggtatttcatgat
ttccgcaatggagcatgcaggaaccttgtctgtactgatctttttactaggggtatagat
attcaagcggtgaatgttgttattaacttcgacttccctaagaactcagaaacgtacctt
catagagttggtcgatcaggaaggtttggccatcttggattagcagtgaatttgatcact
tacgaggaccgctttaacttgtataggatcgaacaagaacttgggactgaaattaagcaa
atccctccacatatcgatcaggctatttactgccggtga
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